1. Home
  2. Species
  3. Porphyridium purpureum
  4. Sequence
  5. lcl|VRMN01000002.1_cds_KAA8496304.1_33

lcl|VRMN01000002.1_cds_KAA8496304.1_33 (KAA8496304)


Aliases : KAA8496304

Description : Copia protein


Gene families : OG_01_0005146 (OrthoFinder) Phylogenetic Tree(s): OG0005146_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|VRMN01000002.1_cds_KAA8496304.1_33
Cluster HCCA: Cluster_23

Target Alias Description ECC score Gene Family Method Actions
lcl|VRMN01000007.1_cds_KAA8493396.1_9697 KAA8493396 Hypothetical protein 0.09 OrthoFinder
lcl|VRMN01000007.1_cds_KAA8493397.1_9698 KAA8493397 Hypothetical protein 0.09 OrthoFinder
lcl|VRMN01000007.1_cds_KAA8493398.1_9699 KAA8493398 Copia protein 0.09 OrthoFinder
lcl|VRMN01000009.1_cds_KAA8492705.1_9398 KAA8492705 Hypothetical protein 0.05 OrthoFinder
lcl|VRMN01000010.1_cds_KAA8492296.1_5479 KAA8492296 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.06 OrthoFinder
lcl|VRMN01000011.1_cds_KAA8491745.1_4753 KAA8491745 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.05 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003677 DNA binding IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006259 DNA metabolic process IEP Enrichment
BP GO:0006310 DNA recombination IEP Enrichment
BP GO:0006313 transposition, DNA-mediated IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
MF GO:0008270 zinc ion binding IEP Enrichment
BP GO:0015074 DNA integration IEP Enrichment
BP GO:0032196 transposition IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0044260 cellular macromolecule metabolic process IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR013103 RVT_2 888 1128
No external refs found!