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  5. lcl|VRMN01000002.1_cds_KAA8496290.1_19

lcl|VRMN01000002.1_cds_KAA8496290.1_19 (KAA8496290)


Aliases : KAA8496290

Description : Retrovirus-related Pol polyprotein from transposon TNT 1-94


Gene families : OG_01_0000588 (OrthoFinder) Phylogenetic Tree(s): OG0000588_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|VRMN01000002.1_cds_KAA8496290.1_19
Cluster HCCA: Cluster_110

Target Alias Description ECC score Gene Family Method Actions
lcl|VRMN01000001.1_cds_KAA8497751.1_6704 KAA8497751 Copia protein 0.09 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8497813.1_6766 KAA8497813 Copia protein 0.04 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8497911.1_6864 KAA8497911 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.09 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8498070.1_7023 KAA8498070 Copia protein 0.04 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8498655.1_7608 KAA8498655 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.07 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8498881.1_7834 KAA8498881 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.06 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8499337.1_8290 KAA8499337 Copia protein 0.07 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8500082.1_9035 KAA8500082 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.02 OrthoFinder
lcl|VRMN01000002.1_cds_KAA8497458.1_1187 KAA8497458 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.04 OrthoFinder
lcl|VRMN01000002.1_cds_KAA8497464.1_1193 KAA8497464 Hypothetical protein 0.11 OrthoFinder
lcl|VRMN01000003.1_cds_KAA8495231.1_1229 KAA8495231 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.06 OrthoFinder
lcl|VRMN01000003.1_cds_KAA8496246.1_2244 KAA8496246 Copia protein 0.11 OrthoFinder
lcl|VRMN01000004.1_cds_KAA8494534.1_3064 KAA8494534 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.06 OrthoFinder
lcl|VRMN01000004.1_cds_KAA8494542.1_3072 KAA8494542 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.11 OrthoFinder
lcl|VRMN01000007.1_cds_KAA8493322.1_9623 KAA8493322 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.12 OrthoFinder
lcl|VRMN01000007.1_cds_KAA8493452.1_9753 KAA8493452 Copia protein 0.05 OrthoFinder
lcl|VRMN01000008.1_cds_KAA8492724.1_2460 KAA8492724 Copia protein 0.05 OrthoFinder
lcl|VRMN01000011.1_cds_KAA8491900.1_4908 KAA8491900 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.11 OrthoFinder
lcl|VRMN01000011.1_cds_KAA8491987.1_4995 KAA8491987 Pol polyprotein 0.04 OrthoFinder
lcl|VRMN01000013.1_cds_KAA8491561.1_6371 KAA8491561 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.1 OrthoFinder
lcl|VRMN01000013.1_cds_KAA8491582.1_6392 KAA8491582 Copia protein 0.02 OrthoFinder
lcl|VRMN01000014.1_cds_KAA8491269.1_2270 KAA8491269 Putative mitochondrial protein 0.08 OrthoFinder
lcl|VRMN01000014.1_cds_KAA8491270.1_2271 KAA8491270 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.05 OrthoFinder
lcl|VRMN01000014.1_cds_KAA8491285.1_2286 KAA8491285 Copia protein 0.17 OrthoFinder
lcl|VRMN01000014.1_cds_KAA8491287.1_2288 KAA8491287 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.08 OrthoFinder
lcl|VRMN01000014.1_cds_KAA8491360.1_2361 KAA8491360 Hypothetical protein 0.11 OrthoFinder
lcl|VRMN01000017.1_cds_KAA8490999.1_6202 KAA8490999 Copia protein 0.08 OrthoFinder
lcl|VRMN01000019.1_cds_KAA8490707.1_5963 KAA8490707 Copia protein 0.06 OrthoFinder
lcl|VRMN01000032.1_cds_KAA8490344.1_5686 KAA8490344 Copia protein 0.06 OrthoFinder

Type GO Term Name Evidence Source
BP GO:0015074 DNA integration IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003724 RNA helicase activity IEP Enrichment
MF GO:0004520 endodeoxyribonuclease activity IEP Enrichment
MF GO:0004536 deoxyribonuclease activity IEP Enrichment
MF GO:0008270 zinc ion binding IEP Enrichment
MF GO:0016888 endodeoxyribonuclease activity, producing 5'-phosphomonoesters IEP Enrichment
BP GO:0018142 protein-DNA covalent cross-linking IEP Enrichment
BP GO:0018143 nucleic acid-protein covalent cross-linking IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043169 cation binding IEP Enrichment
MF GO:0046872 metal ion binding IEP Enrichment
MF GO:0046914 transition metal ion binding IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
InterPro domains Description Start Stop
IPR001584 Integrase_cat-core 207 305
IPR013103 RVT_2 552 780
No external refs found!