lcl|VRMN01000002.1_cds_KAA8496275.1_4 (KAA8496275)


Aliases : KAA8496275

Description : Retrotransposable element


Gene families : OG_01_0000233 (OrthoFinder) Phylogenetic Tree(s): OG0000233_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|VRMN01000002.1_cds_KAA8496275.1_4
Cluster HCCA: Cluster_31

Target Alias Description ECC score Gene Family Method Actions
lcl|VRMN01000002.1_cds_KAA8497468.1_1197 KAA8497468 Reverse transcriptase domain [Interproscan]. 0.08 OrthoFinder
lcl|VRMN01000002.1_cds_KAA8497470.1_1199 KAA8497470 Hypothetical protein 0.06 OrthoFinder
lcl|VRMN01000003.1_cds_KAA8496268.1_2266 KAA8496268 Hypothetical protein 0.12 OrthoFinder
lcl|VRMN01000004.1_cds_KAA8494359.1_2889 KAA8494359 Retrovirus-related Pol polyprotein from type-1... 0.07 OrthoFinder
lcl|VRMN01000005.1_cds_KAA8494358.1_4222 KAA8494358 Retrotransposable element 0.06 OrthoFinder
lcl|VRMN01000009.1_cds_KAA8492708.1_9401 KAA8492708 Copia protein 0.05 OrthoFinder
lcl|VRMN01000010.1_cds_KAA8492026.1_5209 KAA8492026 Hypothetical protein 0.08 OrthoFinder
lcl|VRMN01000010.1_cds_KAA8492295.1_5478 KAA8492295 Hypothetical protein 0.11 OrthoFinder
lcl|VRMN01000019.1_cds_KAA8490703.1_5959 KAA8490703 Retrotransposable element 0.07 OrthoFinder
lcl|VRMN01000022.1_cds_KAA8490572.1_6045 KAA8490572 Hypothetical protein 0.08 OrthoFinder
lcl|VRMN01000022.1_cds_KAA8490574.1_6047 KAA8490574 RNA-directed DNA polymerase from mobile element jockey 0.06 OrthoFinder
lcl|VRMN01000028.1_cds_KAA8490413.1_5036 KAA8490413 Retrotransposable element 0.08 OrthoFinder
lcl|VRMN01000029.1_cds_KAA8490408.1_6097 KAA8490408 Hypothetical protein 0.08 OrthoFinder
lcl|VRMN01000029.1_cds_KAA8490410.1_6099 KAA8490410 Hypothetical protein 0.07 OrthoFinder
lcl|VRMN01000032.1_cds_KAA8490339.1_5681 KAA8490339 Retrotransposable element 0.07 OrthoFinder
lcl|VRMN01000034.1_cds_KAA8490314.1_2442 KAA8490314 Retrotransposable element 0.04 OrthoFinder
lcl|VRMN01000038.1_cds_KAA8490258.1_2417 KAA8490258 Hypothetical protein 0.14 OrthoFinder
lcl|VRMN01000038.1_cds_KAA8490261.1_2420 KAA8490261 Hypothetical protein 0.07 OrthoFinder
lcl|VRMN01000040.1_cds_KAA8490248.1_2447 KAA8490248 Hypothetical protein 0.04 OrthoFinder
lcl|VRMN01000041.1_cds_KAA8490243.1_5207 KAA8490243 Hypothetical protein 0.05 OrthoFinder
lcl|VRMN01000042.1_cds_KAA8490237.1_6104 KAA8490237 Hypothetical protein 0.09 OrthoFinder
lcl|VRMN01000042.1_cds_KAA8490239.1_6106 KAA8490239 Hypothetical protein 0.09 OrthoFinder
lcl|VRMN01000044.1_cds_KAA8490228.1_6080 KAA8490228 Hypothetical protein 0.04 OrthoFinder
lcl|VRMN01000045.1_cds_KAA8490222.1_4686 KAA8490222 Hypothetical protein 0.09 OrthoFinder
lcl|VRMN01000047.1_cds_KAA8490211.1_4224 KAA8490211 Retrotransposable element 0.09 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR000477 RT_dom 455 652
No external refs found!