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  5. lcl|VRMN01000001.1_cds_KAA8499872.1_8825

lcl|VRMN01000001.1_cds_KAA8499872.1_8825 (KAA8499872)


Aliases : KAA8499872

Description : 40S ribosomal protein S20


Gene families : OG_01_0003147 (OrthoFinder) Phylogenetic Tree(s): OG0003147_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|VRMN01000001.1_cds_KAA8499872.1_8825
Cluster HCCA: Cluster_105

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000842.28 tig00000842_g4847.t1 Protein biosynthesis.cytosolic ribosome.small subunit... 0.16 OrthoFinder
Cre16.g660150 30777532 Protein biosynthesis.cytosolic ribosome.small subunit... 0.24 OrthoFinder
Cz02g17070.t1 No alias Ribosomal protein S10 domain [Interproscan]. 0.23 OrthoFinder
Dusal.0043s00003.1 33199620 Ribosomal protein S10 domain [Interproscan]. 0.09 OrthoFinder
EOD09635 No alias Ribosomal protein S10 domain [Interproscan]. 0.15 OrthoFinder
OT_03G01040.1 No alias Ribosomal protein S10 domain [Interproscan]. 0.12 OrthoFinder
PTI_31G00020.1 No alias Ribosomal protein S10 domain [Interproscan]. 0.12 OrthoFinder
Sro143_g066550.1 Contig3754.g28761 40S ribosomal protein S20 0.23 OrthoFinder
SymbC1.scaffold2016.8 2016.8 Ribosomal protein S10 domain [Interproscan]. 0.03 OrthoFinder
SymbC1.scaffold3818.4 3818.4 Ribosomal protein S10 domain [Interproscan]. 0.01 OrthoFinder
TP04G01100.1 No alias Ribosomal protein S10 domain [Interproscan]. 0.09 OrthoFinder
Vocar.0004s0092.1 32889737 Ribosomal protein S10 domain [Interproscan]. 0.15 OrthoFinder
XM_002501663.1 MICPUN_57744, 57744 Ribosomal protein S10 domain [Interproscan]. 0.18 OrthoFinder
XM_003062597.1 MicpuC2_35904, 35904 Ribosomal protein S10 domain [Interproscan]. 0.1 OrthoFinder
lcl|LHPG02000010.1_cds_PRW51058.1_1171 PRW51058 Ribosomal S1 0.11 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003735 structural constituent of ribosome IEP Enrichment
MF GO:0003922 GMP synthase (glutamine-hydrolyzing) activity IEP Enrichment
MF GO:0004055 argininosuccinate synthase activity IEP Enrichment
MF GO:0005198 structural molecule activity IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
CC GO:0005730 nucleolus IEP Enrichment
CC GO:0005840 ribosome IEP Enrichment
BP GO:0006177 GMP biosynthetic process IEP Enrichment
BP GO:0006364 rRNA processing IEP Enrichment
BP GO:0006412 translation IEP Enrichment
BP GO:0006518 peptide metabolic process IEP Enrichment
BP GO:0006525 arginine metabolic process IEP Enrichment
BP GO:0006526 arginine biosynthetic process IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
BP GO:0008150 biological_process IEP Enrichment
BP GO:0008152 metabolic process IEP Enrichment
BP GO:0009058 biosynthetic process IEP Enrichment
BP GO:0009059 macromolecule biosynthetic process IEP Enrichment
BP GO:0009064 glutamine family amino acid metabolic process IEP Enrichment
BP GO:0009084 glutamine family amino acid biosynthetic process IEP Enrichment
BP GO:0009123 nucleoside monophosphate metabolic process IEP Enrichment
BP GO:0009124 nucleoside monophosphate biosynthetic process IEP Enrichment
BP GO:0009126 purine nucleoside monophosphate metabolic process IEP Enrichment
BP GO:0009127 purine nucleoside monophosphate biosynthetic process IEP Enrichment
BP GO:0009156 ribonucleoside monophosphate biosynthetic process IEP Enrichment
BP GO:0009161 ribonucleoside monophosphate metabolic process IEP Enrichment
BP GO:0009167 purine ribonucleoside monophosphate metabolic process IEP Enrichment
BP GO:0009168 purine ribonucleoside monophosphate biosynthetic process IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
MF GO:0015298 solute:cation antiporter activity IEP Enrichment
MF GO:0015299 solute:proton antiporter activity IEP Enrichment
CC GO:0015934 large ribosomal subunit IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
BP GO:0016072 rRNA metabolic process IEP Enrichment
MF GO:0016874 ligase activity IEP Enrichment
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP Enrichment
MF GO:0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor IEP Enrichment
BP GO:0019538 protein metabolic process IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0034645 cellular macromolecule biosynthetic process IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
BP GO:0043043 peptide biosynthetic process IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043228 non-membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Enrichment
BP GO:0043603 cellular amide metabolic process IEP Enrichment
BP GO:0043604 amide biosynthetic process IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0044238 primary metabolic process IEP Enrichment
BP GO:0044249 cellular biosynthetic process IEP Enrichment
BP GO:0044260 cellular macromolecule metabolic process IEP Enrichment
BP GO:0044267 cellular protein metabolic process IEP Enrichment
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Enrichment
CC GO:0044391 ribosomal subunit IEP Enrichment
BP GO:0046037 GMP metabolic process IEP Enrichment
BP GO:0071704 organic substance metabolic process IEP Enrichment
CC GO:0110165 cellular anatomical entity IEP Enrichment
BP GO:1901564 organonitrogen compound metabolic process IEP Enrichment
BP GO:1901566 organonitrogen compound biosynthetic process IEP Enrichment
BP GO:1901576 organic substance biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR027486 Ribosomal_S10_dom 19 112
No external refs found!