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  5. lcl|VRMN01000001.1_cds_KAA8499866.1_8819

lcl|VRMN01000001.1_cds_KAA8499866.1_8819 (KAA8499866)


Aliases : KAA8499866

Description : Coatomer subunit beta-1


Gene families : OG_01_0002435 (OrthoFinder) Phylogenetic Tree(s): OG0002435_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|VRMN01000001.1_cds_KAA8499866.1_8819
Cluster HCCA: Cluster_100

Target Alias Description ECC score Gene Family Method Actions
EOD12644 No alias COPB1, beta subunit of the coatomer [Ensembl]. 0.02 OrthoFinder
EOD12708 No alias COPB1, beta subunit of the coatomer [Ensembl]. 0.02 OrthoFinder
OT_04G02630.1 No alias Coatomer beta subunit, appendage platform domain;... 0.02 OrthoFinder
PTI_09G00360.1 No alias Coatomer beta subunit, C-terminal; Coatomer beta... 0.02 OrthoFinder
lcl|BLLF01001130.1_cds_GFH17326.1_11803 HaLaN_13936, GFH17326 Beta-coat protein 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005198 structural molecule activity IEA Interproscan
BP GO:0006886 intracellular protein transport IEA Interproscan
BP GO:0016192 vesicle-mediated transport IEA Interproscan
CC GO:0030117 membrane coat IEA Interproscan
CC GO:0030126 COPI vesicle coat IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP Enrichment
BP GO:0000105 histidine biosynthetic process IEP Enrichment
MF GO:0003756 protein disulfide isomerase activity IEP Enrichment
MF GO:0003824 catalytic activity IEP Enrichment
MF GO:0003856 3-dehydroquinate synthase activity IEP Enrichment
MF GO:0003879 ATP phosphoribosyltransferase activity IEP Enrichment
MF GO:0003909 DNA ligase activity IEP Enrichment
MF GO:0003911 DNA ligase (NAD+) activity IEP Enrichment
MF GO:0004190 aspartic-type endopeptidase activity IEP Enrichment
MF GO:0004486 methylenetetrahydrofolate dehydrogenase [NAD(P)+] activity IEP Enrichment
MF GO:0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity IEP Enrichment
MF GO:0004576 oligosaccharyl transferase activity IEP Enrichment
CC GO:0005643 nuclear pore IEP Enrichment
CC GO:0005694 chromosome IEP Enrichment
CC GO:0005783 endoplasmic reticulum IEP Enrichment
CC GO:0005789 endoplasmic reticulum membrane IEP Enrichment
CC GO:0005887 integral component of plasma membrane IEP Enrichment
BP GO:0006082 organic acid metabolic process IEP Enrichment
BP GO:0006464 cellular protein modification process IEP Enrichment
BP GO:0006486 protein glycosylation IEP Enrichment
BP GO:0006487 protein N-linked glycosylation IEP Enrichment
BP GO:0006547 histidine metabolic process IEP Enrichment
BP GO:0009072 aromatic amino acid family metabolic process IEP Enrichment
BP GO:0009073 aromatic amino acid family biosynthetic process IEP Enrichment
BP GO:0009306 protein secretion IEP Enrichment
BP GO:0016053 organic acid biosynthetic process IEP Enrichment
MF GO:0016645 oxidoreductase activity, acting on the CH-NH group of donors IEP Enrichment
MF GO:0016646 oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor IEP Enrichment
MF GO:0016763 pentosyltransferase activity IEP Enrichment
MF GO:0016838 carbon-oxygen lyase activity, acting on phosphates IEP Enrichment
MF GO:0016860 intramolecular oxidoreductase activity IEP Enrichment
MF GO:0016864 intramolecular oxidoreductase activity, transposing S-S bonds IEP Enrichment
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP Enrichment
MF GO:0017056 structural constituent of nuclear pore IEP Enrichment
CC GO:0017119 Golgi transport complex IEP Enrichment
BP GO:0018196 peptidyl-asparagine modification IEP Enrichment
BP GO:0018279 protein N-linked glycosylation via asparagine IEP Enrichment
CC GO:0031226 intrinsic component of plasma membrane IEP Enrichment
BP GO:0032940 secretion by cell IEP Enrichment
BP GO:0035592 establishment of protein localization to extracellular region IEP Enrichment
BP GO:0036211 protein modification process IEP Enrichment
BP GO:0043412 macromolecule modification IEP Enrichment
BP GO:0043413 macromolecule glycosylation IEP Enrichment
BP GO:0046903 secretion IEP Enrichment
MF GO:0070001 aspartic-type peptidase activity IEP Enrichment
BP GO:0070085 glycosylation IEP Enrichment
BP GO:0071692 protein localization to extracellular region IEP Enrichment
CC GO:0099023 vesicle tethering complex IEP Enrichment
CC GO:0110165 cellular anatomical entity IEP Enrichment
BP GO:0140352 export from cell IEP Enrichment
BP GO:1901564 organonitrogen compound metabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR011710 Coatomer_bsu_C 709 856
IPR002553 Clathrin/coatomer_adapt-like_N 41 511
IPR029446 COPB1_appendage_platform_dom 862 988
No external refs found!