lcl|VRMN01000001.1_cds_KAA8499802.1_8755 (KAA8499802)

Aliases : KAA8499802

Description : DNA topoisomerase 1 beta

Gene families : OG_01_0002413 (OrthoFinder) Phylogenetic Tree(s): OG0002413_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type Description Actions
Neighborhood HRR: lcl|VRMN01000001.1_cds_KAA8499802.1_8755
Cluster HCCA: Cluster_87

Target Alias Description ECC score Gene Family Method Actions
Sro1053_g235820.1 Contig4118.g31453 DNA topoisomerase 1 0.03 OrthoFinder
Sro3393_g347530.1 Contig655.g7779 DNA topoisomerase I, mitochondrial 0.02 OrthoFinder
SymbC1.scaffold143.2 143.2 Topoisomerase I C-terminal domain; DNA topoisomerase I,... 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003917 DNA topoisomerase type I (single strand cut, ATP-independent) activity IEA Interproscan
BP GO:0006265 DNA topological change IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEP Enrichment
MF GO:0004177 aminopeptidase activity IEP Enrichment
CC GO:0005743 mitochondrial inner membrane IEP Enrichment
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Enrichment
BP GO:0008535 respiratory chain complex IV assembly IEP Enrichment
CC GO:0016592 mediator complex IEP Enrichment
BP GO:0017004 cytochrome complex assembly IEP Enrichment
CC GO:0019866 organelle inner membrane IEP Enrichment
MF GO:0030145 manganese ion binding IEP Enrichment
CC GO:0030880 RNA polymerase complex IEP Enrichment
CC GO:0031966 mitochondrial membrane IEP Enrichment
BP GO:0033108 mitochondrial respiratory chain complex assembly IEP Enrichment
BP GO:0033617 mitochondrial cytochrome c oxidase assembly IEP Enrichment
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP Enrichment
MF GO:0070403 NAD+ binding IEP Enrichment
InterPro domains Description Start Stop
IPR008336 TopoI_DNA-bd_euk 174 390
IPR013500 TopoI_cat_euk 393 617
IPR025834 TopoI_C_dom 680 749
No external refs found!