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  5. lcl|VRMN01000001.1_cds_KAA8499795.1_8748

lcl|VRMN01000001.1_cds_KAA8499795.1_8748 (KAA8499795)


Aliases : KAA8499795

Description : 40S ribosomal protein S16-1


Gene families : OG_01_0003842 (OrthoFinder) Phylogenetic Tree(s): OG0003842_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|VRMN01000001.1_cds_KAA8499795.1_8748
Cluster HCCA: Cluster_9

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000123.14 tig00000123_g6920.t1 Protein biosynthesis.cytosolic ribosome.small subunit... 0.21 OrthoFinder
Cre13.g573351 30784543 Protein biosynthesis.cytosolic ribosome.small subunit... 0.29 OrthoFinder
Cz19g06110.t1 No alias Ribosomal protein S9 [Interproscan]. 0.05 OrthoFinder
Dusal.0024s00015.1 33202210 Ribosomal protein S9 [Interproscan]. 0.18 OrthoFinder
OT_05G03950.1 No alias Ribosomal protein S9 [Interproscan]. 0.18 OrthoFinder
PTI_01G05180.1 No alias Ribosomal protein S9 [Interproscan]. 0.25 OrthoFinder
Sro245_g097460.1 Contig3087.g24617 40S ribosomal protein S16 0.31 OrthoFinder
TP04G04250.1 No alias Ribosomal protein S9 [Interproscan]. 0.31 OrthoFinder
Transcript_contig_90600 90600 Ribosomal protein S9 [Interproscan]. 0.04 OrthoFinder
Vocar.0001s0196.1 32884947 Ribosomal protein S9 [Interproscan]. 0.11 OrthoFinder
XM_002500943.1 MICPUN_93705, 93705 Ribosomal protein S9 [Interproscan]. 0.28 OrthoFinder
XM_003056840.1 MicpuC2_62402, 62402 Ribosomal protein S9 [Interproscan]. 0.11 OrthoFinder
lcl|BLLF01003770.1_cds_GFH28167.1_22644 HaLaN_26611, GFH28167 Ribosomal protein S9 [Interproscan]. 0.02 OrthoFinder
lcl|LHPG02000007.1_cds_PRW57188.1_8811 PRW57188 40S ribosomal S16 0.29 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000097 sulfur amino acid biosynthetic process IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
CC GO:0005741 mitochondrial outer membrane IEP Enrichment
BP GO:0006555 methionine metabolic process IEP Enrichment
MF GO:0008097 5S rRNA binding IEP Enrichment
MF GO:0008172 S-methyltransferase activity IEP Enrichment
MF GO:0008705 methionine synthase activity IEP Enrichment
BP GO:0009086 methionine biosynthetic process IEP Enrichment
MF GO:0015298 solute:cation antiporter activity IEP Enrichment
MF GO:0015299 solute:proton antiporter activity IEP Enrichment
CC GO:0015934 large ribosomal subunit IEP Enrichment
MF GO:0019843 rRNA binding IEP Enrichment
CC GO:0019867 outer membrane IEP Enrichment
MF GO:0031072 heat shock protein binding IEP Enrichment
MF GO:0031419 cobalamin binding IEP Enrichment
CC GO:0031966 mitochondrial membrane IEP Enrichment
CC GO:0031968 organelle outer membrane IEP Enrichment
MF GO:0042084 5-methyltetrahydrofolate-dependent methyltransferase activity IEP Enrichment
BP GO:0042558 pteridine-containing compound metabolic process IEP Enrichment
CC GO:0044391 ribosomal subunit IEP Enrichment
CC GO:0098588 bounding membrane of organelle IEP Enrichment
InterPro domains Description Start Stop
IPR000754 Ribosomal_S9 10 142
No external refs found!