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  5. lcl|VRMN01000001.1_cds_KAA8499730.1_8683

lcl|VRMN01000001.1_cds_KAA8499730.1_8683 (KAA8499730)


Aliases : KAA8499730

Description : Protein transport protein Sec24-like


Gene families : OG_01_0000893 (OrthoFinder) Phylogenetic Tree(s): OG0000893_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|VRMN01000001.1_cds_KAA8499730.1_8683
Cluster HCCA: Cluster_92

Target Alias Description ECC score Gene Family Method Actions
Cre01.g035850 30788608, SEC24B Vesicle trafficking.Coat protein II (COPII) coatomer... 0.02 OrthoFinder
Cz06g26070.t1 No alias Sec23/Sec24, trunk domain; Sec23/Sec24, helical domain;... 0.02 OrthoFinder
OT_12G02410.1 No alias Sec23/Sec24 beta-sandwich; Sec23/Sec24, trunk domain;... 0.02 OrthoFinder
Vocar.0001s0725.1 32884529 Sec23/Sec24, trunk domain; Sec23/Sec24, helical domain;... 0.02 OrthoFinder
XM_003055317.1 MicpuC2_49909, 49909 Sec23/Sec24 beta-sandwich; Sec23/Sec24, helical domain;... 0.02 OrthoFinder
lcl|LHPG02000003.1_cds_PRW59573.1_6417 PRW59573 Transport Sec24-like protein 0.02 OrthoFinder

Type GO Term Name Evidence Source
BP GO:0006886 intracellular protein transport IEA Interproscan
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
CC GO:0030127 COPII vesicle coat IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000213 tRNA-intron endonuclease activity IEP Enrichment
BP GO:0000394 RNA splicing, via endonucleolytic cleavage and ligation IEP Enrichment
MF GO:0003916 DNA topoisomerase activity IEP Enrichment
MF GO:0004018 N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity IEP Enrichment
MF GO:0004549 tRNA-specific ribonuclease activity IEP Enrichment
MF GO:0004576 oligosaccharyl transferase activity IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
BP GO:0006188 IMP biosynthetic process IEP Enrichment
BP GO:0006265 DNA topological change IEP Enrichment
BP GO:0006388 tRNA splicing, via endonucleolytic cleavage and ligation IEP Enrichment
BP GO:0006996 organelle organization IEP Enrichment
BP GO:0008616 queuosine biosynthetic process IEP Enrichment
BP GO:0009092 homoserine metabolic process IEP Enrichment
BP GO:0009116 nucleoside metabolic process IEP Enrichment
BP GO:0009119 ribonucleoside metabolic process IEP Enrichment
BP GO:0009123 nucleoside monophosphate metabolic process IEP Enrichment
BP GO:0009124 nucleoside monophosphate biosynthetic process IEP Enrichment
BP GO:0009126 purine nucleoside monophosphate metabolic process IEP Enrichment
BP GO:0009127 purine nucleoside monophosphate biosynthetic process IEP Enrichment
BP GO:0009156 ribonucleoside monophosphate biosynthetic process IEP Enrichment
BP GO:0009161 ribonucleoside monophosphate metabolic process IEP Enrichment
BP GO:0009163 nucleoside biosynthetic process IEP Enrichment
BP GO:0009166 nucleotide catabolic process IEP Enrichment
BP GO:0009167 purine ribonucleoside monophosphate metabolic process IEP Enrichment
BP GO:0009168 purine ribonucleoside monophosphate biosynthetic process IEP Enrichment
BP GO:0016043 cellular component organization IEP Enrichment
MF GO:0016657 oxidoreductase activity, acting on NAD(P)H, nitrogenous group as acceptor IEP Enrichment
MF GO:0016787 hydrolase activity IEP Enrichment
MF GO:0016788 hydrolase activity, acting on ester bonds IEP Enrichment
MF GO:0016840 carbon-nitrogen lyase activity IEP Enrichment
MF GO:0016842 amidine-lyase activity IEP Enrichment
MF GO:0016853 isomerase activity IEP Enrichment
MF GO:0016892 endoribonuclease activity, producing 3'-phosphomonoesters IEP Enrichment
MF GO:0016894 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 3'-phosphomonoesters IEP Enrichment
BP GO:0018130 heterocycle biosynthetic process IEP Enrichment
BP GO:0019346 transsulfuration IEP Enrichment
BP GO:0019438 aromatic compound biosynthetic process IEP Enrichment
CC GO:0019867 outer membrane IEP Enrichment
CC GO:0030126 COPI vesicle coat IEP Enrichment
MF GO:0033739 preQ1 synthase activity IEP Enrichment
BP GO:0034404 nucleobase-containing small molecule biosynthetic process IEP Enrichment
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Enrichment
BP GO:0042455 ribonucleoside biosynthetic process IEP Enrichment
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Enrichment
BP GO:0044281 small molecule metabolic process IEP Enrichment
BP GO:0044283 small molecule biosynthetic process IEP Enrichment
BP GO:0046040 IMP metabolic process IEP Enrichment
BP GO:0046116 queuosine metabolic process IEP Enrichment
BP GO:0050667 homocysteine metabolic process IEP Enrichment
BP GO:0051276 chromosome organization IEP Enrichment
BP GO:0055086 nucleobase-containing small molecule metabolic process IEP Enrichment
BP GO:0071103 DNA conformation change IEP Enrichment
BP GO:1901135 carbohydrate derivative metabolic process IEP Enrichment
BP GO:1901137 carbohydrate derivative biosynthetic process IEP Enrichment
BP GO:1901362 organic cyclic compound biosynthetic process IEP Enrichment
BP GO:1901657 glycosyl compound metabolic process IEP Enrichment
BP GO:1901659 glycosyl compound biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR006896 Sec23/24_trunk_dom 522 643
IPR006896 Sec23/24_trunk_dom 388 498
IPR006895 Znf_Sec23_Sec24 313 351
IPR006900 Sec23/24_helical_dom 748 828
IPR012990 Sec23_24_beta_S 653 736
No external refs found!