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Aliases : KAA8499623
Description : 60S ribosomal protein L7-4
Gene families : OG_01_0002109 (OrthoFinder) Phylogenetic Tree(s): OG0002109_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: lcl|VRMN01000001.1_cds_KAA8499623.1_8576 | |
| Cluster | HCCA: Cluster_9 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Cpa|evm.model.tig00020909.42 | tig00020909_g15363.t1 | Protein biosynthesis.cytosolic ribosome.large subunit... | 0.17 | OrthoFinder | |
| Cre12.g537800 | 30791776, RPL7 | Protein biosynthesis.cytosolic ribosome.large subunit... | 0.16 | OrthoFinder | |
| Cz10g26010.t1 | No alias | Hypothetical protein | 0.05 | OrthoFinder | |
| Dusal.1371s00001.1 | 33191881 | Ribosomal protein L30, ferredoxin-like fold domain;... | 0.13 | OrthoFinder | |
| EOD11472 | No alias | Ribosomal protein L30, N-terminal; Ribosomal protein... | 0.1 | OrthoFinder | |
| EOD41169 | No alias | Ribosomal protein L30, N-terminal; Ribosomal protein... | 0.1 | OrthoFinder | |
| OT_03G01610.1 | No alias | Ribosomal protein L30, N-terminal; Ribosomal protein... | 0.08 | OrthoFinder | |
| PTI_19G01830.1 | No alias | Ribosomal protein L30, ferredoxin-like fold domain;... | 0.15 | OrthoFinder | |
| Sro264_g102550.1 | Contig921.g9681 | 60S ribosomal protein L7 | 0.17 | OrthoFinder | |
| SymbC1.scaffold680.2 | 680.2 | Ribosomal protein L30, ferredoxin-like fold domain;... | 0.07 | OrthoFinder | |
| TP02G06700.1 | No alias | Ribosomal protein L30, ferredoxin-like fold domain;... | 0.11 | OrthoFinder | |
| Vocar.0034s0005.1 | 32893109 | Ribosomal protein L30, N-terminal; Ribosomal protein... | 0.03 | OrthoFinder | |
| XM_002500889.1 | MICPUN_106801, 106801 | Ribosomal protein L30, ferredoxin-like fold domain;... | 0.13 | OrthoFinder | |
| lcl|BLLF01000775.1_cds_GFH14862.1_9339 | HaLaN_10989, GFH14862 | Ribosomal protein L30, ferredoxin-like fold domain;... | 0.02 | OrthoFinder | |
| lcl|LHPG02000024.1_cds_PRW20371.1_5557 | PRW20371 | 60S ribosomal L7-2 | 0.14 | OrthoFinder |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0000097 | sulfur amino acid biosynthetic process | IEP | Enrichment |
| MF | GO:0000213 | tRNA-intron endonuclease activity | IEP | Enrichment |
| BP | GO:0000394 | RNA splicing, via endonucleolytic cleavage and ligation | IEP | Enrichment |
| MF | GO:0000774 | adenyl-nucleotide exchange factor activity | IEP | Enrichment |
| BP | GO:0002097 | tRNA wobble base modification | IEP | Enrichment |
| BP | GO:0002100 | tRNA wobble adenosine to inosine editing | IEP | Enrichment |
| MF | GO:0003674 | molecular_function | IEP | Enrichment |
| MF | GO:0003676 | nucleic acid binding | IEP | Enrichment |
| MF | GO:0003723 | RNA binding | IEP | Enrichment |
| MF | GO:0003735 | structural constituent of ribosome | IEP | Enrichment |
| MF | GO:0004000 | adenosine deaminase activity | IEP | Enrichment |
| MF | GO:0004486 | methylenetetrahydrofolate dehydrogenase [NAD(P)+] activity | IEP | Enrichment |
| MF | GO:0004488 | methylenetetrahydrofolate dehydrogenase (NADP+) activity | IEP | Enrichment |
| MF | GO:0004549 | tRNA-specific ribonuclease activity | IEP | Enrichment |
| MF | GO:0004812 | aminoacyl-tRNA ligase activity | IEP | Enrichment |
| MF | GO:0004827 | proline-tRNA ligase activity | IEP | Enrichment |
| MF | GO:0005047 | signal recognition particle binding | IEP | Enrichment |
| MF | GO:0005048 | signal sequence binding | IEP | Enrichment |
| MF | GO:0005198 | structural molecule activity | IEP | Enrichment |
| CC | GO:0005575 | cellular_component | IEP | Enrichment |
| CC | GO:0005741 | mitochondrial outer membrane | IEP | Enrichment |
| CC | GO:0005783 | endoplasmic reticulum | IEP | Enrichment |
| CC | GO:0005786 | signal recognition particle, endoplasmic reticulum targeting | IEP | Enrichment |
| CC | GO:0005840 | ribosome | IEP | Enrichment |
| BP | GO:0006082 | organic acid metabolic process | IEP | Enrichment |
| BP | GO:0006382 | adenosine to inosine editing | IEP | Enrichment |
| BP | GO:0006388 | tRNA splicing, via endonucleolytic cleavage and ligation | IEP | Enrichment |
| BP | GO:0006399 | tRNA metabolic process | IEP | Enrichment |
| BP | GO:0006412 | translation | IEP | Enrichment |
| BP | GO:0006418 | tRNA aminoacylation for protein translation | IEP | Enrichment |
| BP | GO:0006433 | prolyl-tRNA aminoacylation | IEP | Enrichment |
| BP | GO:0006457 | protein folding | IEP | Enrichment |
| BP | GO:0006518 | peptide metabolic process | IEP | Enrichment |
| BP | GO:0006520 | cellular amino acid metabolic process | IEP | Enrichment |
| BP | GO:0006555 | methionine metabolic process | IEP | Enrichment |
| BP | GO:0006612 | protein targeting to membrane | IEP | Enrichment |
| BP | GO:0006613 | cotranslational protein targeting to membrane | IEP | Enrichment |
| BP | GO:0006614 | SRP-dependent cotranslational protein targeting to membrane | IEP | Enrichment |
| BP | GO:0006807 | nitrogen compound metabolic process | IEP | Enrichment |
| BP | GO:0006886 | intracellular protein transport | IEP | Enrichment |
| BP | GO:0008033 | tRNA processing | IEP | Enrichment |
| MF | GO:0008097 | 5S rRNA binding | IEP | Enrichment |
| BP | GO:0008104 | protein localization | IEP | Enrichment |
| BP | GO:0008150 | biological_process | IEP | Enrichment |
| BP | GO:0008152 | metabolic process | IEP | Enrichment |
| MF | GO:0008172 | S-methyltransferase activity | IEP | Enrichment |
| MF | GO:0008251 | tRNA-specific adenosine deaminase activity | IEP | Enrichment |
| MF | GO:0008312 | 7S RNA binding | IEP | Enrichment |
| BP | GO:0008380 | RNA splicing | IEP | Enrichment |
| MF | GO:0008705 | methionine synthase activity | IEP | Enrichment |
| BP | GO:0009058 | biosynthetic process | IEP | Enrichment |
| BP | GO:0009059 | macromolecule biosynthetic process | IEP | Enrichment |
| BP | GO:0009086 | methionine biosynthetic process | IEP | Enrichment |
| BP | GO:0009987 | cellular process | IEP | Enrichment |
| BP | GO:0015031 | protein transport | IEP | Enrichment |
| BP | GO:0016070 | RNA metabolic process | IEP | Enrichment |
| BP | GO:0016553 | base conversion or substitution editing | IEP | Enrichment |
| MF | GO:0016645 | oxidoreductase activity, acting on the CH-NH group of donors | IEP | Enrichment |
| MF | GO:0016646 | oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor | IEP | Enrichment |
| MF | GO:0016810 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds | IEP | Enrichment |
| MF | GO:0016814 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines | IEP | Enrichment |
| MF | GO:0016875 | ligase activity, forming carbon-oxygen bonds | IEP | Enrichment |
| MF | GO:0016892 | endoribonuclease activity, producing 3'-phosphomonoesters | IEP | Enrichment |
| MF | GO:0016894 | endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 3'-phosphomonoesters | IEP | Enrichment |
| MF | GO:0019239 | deaminase activity | IEP | Enrichment |
| BP | GO:0019538 | protein metabolic process | IEP | Enrichment |
| BP | GO:0019752 | carboxylic acid metabolic process | IEP | Enrichment |
| MF | GO:0019843 | rRNA binding | IEP | Enrichment |
| CC | GO:0019867 | outer membrane | IEP | Enrichment |
| MF | GO:0030942 | endoplasmic reticulum signal peptide binding | IEP | Enrichment |
| MF | GO:0031419 | cobalamin binding | IEP | Enrichment |
| CC | GO:0031966 | mitochondrial membrane | IEP | Enrichment |
| CC | GO:0031968 | organelle outer membrane | IEP | Enrichment |
| BP | GO:0033036 | macromolecule localization | IEP | Enrichment |
| MF | GO:0033218 | amide binding | IEP | Enrichment |
| BP | GO:0034470 | ncRNA processing | IEP | Enrichment |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | Enrichment |
| BP | GO:0034645 | cellular macromolecule biosynthetic process | IEP | Enrichment |
| BP | GO:0034660 | ncRNA metabolic process | IEP | Enrichment |
| MF | GO:0042084 | 5-methyltetrahydrofolate-dependent methyltransferase activity | IEP | Enrichment |
| MF | GO:0042277 | peptide binding | IEP | Enrichment |
| BP | GO:0042558 | pteridine-containing compound metabolic process | IEP | Enrichment |
| MF | GO:0042802 | identical protein binding | IEP | Enrichment |
| MF | GO:0042803 | protein homodimerization activity | IEP | Enrichment |
| MF | GO:0043021 | ribonucleoprotein complex binding | IEP | Enrichment |
| BP | GO:0043038 | amino acid activation | IEP | Enrichment |
| BP | GO:0043039 | tRNA aminoacylation | IEP | Enrichment |
| BP | GO:0043043 | peptide biosynthetic process | IEP | Enrichment |
| BP | GO:0043170 | macromolecule metabolic process | IEP | Enrichment |
| CC | GO:0043226 | organelle | IEP | Enrichment |
| CC | GO:0043228 | non-membrane-bounded organelle | IEP | Enrichment |
| CC | GO:0043229 | intracellular organelle | IEP | Enrichment |
| CC | GO:0043232 | intracellular non-membrane-bounded organelle | IEP | Enrichment |
| BP | GO:0043436 | oxoacid metabolic process | IEP | Enrichment |
| BP | GO:0043603 | cellular amide metabolic process | IEP | Enrichment |
| BP | GO:0043604 | amide biosynthetic process | IEP | Enrichment |
| BP | GO:0044237 | cellular metabolic process | IEP | Enrichment |
| BP | GO:0044238 | primary metabolic process | IEP | Enrichment |
| BP | GO:0044249 | cellular biosynthetic process | IEP | Enrichment |
| BP | GO:0044260 | cellular macromolecule metabolic process | IEP | Enrichment |
| BP | GO:0044267 | cellular protein metabolic process | IEP | Enrichment |
| BP | GO:0044271 | cellular nitrogen compound biosynthetic process | IEP | Enrichment |
| MF | GO:0044877 | protein-containing complex binding | IEP | Enrichment |
| BP | GO:0045184 | establishment of protein localization | IEP | Enrichment |
| BP | GO:0046907 | intracellular transport | IEP | Enrichment |
| CC | GO:0048500 | signal recognition particle | IEP | Enrichment |
| MF | GO:0051087 | chaperone binding | IEP | Enrichment |
| BP | GO:0051641 | cellular localization | IEP | Enrichment |
| BP | GO:0051649 | establishment of localization in cell | IEP | Enrichment |
| MF | GO:0060590 | ATPase regulator activity | IEP | Enrichment |
| BP | GO:0071704 | organic substance metabolic process | IEP | Enrichment |
| MF | GO:0097159 | organic cyclic compound binding | IEP | Enrichment |
| CC | GO:0098588 | bounding membrane of organelle | IEP | Enrichment |
| CC | GO:0110165 | cellular anatomical entity | IEP | Enrichment |
| MF | GO:0140098 | catalytic activity, acting on RNA | IEP | Enrichment |
| MF | GO:0140101 | catalytic activity, acting on a tRNA | IEP | Enrichment |
| MF | GO:1901363 | heterocyclic compound binding | IEP | Enrichment |
| BP | GO:1901564 | organonitrogen compound metabolic process | IEP | Enrichment |
| BP | GO:1901566 | organonitrogen compound biosynthetic process | IEP | Enrichment |
| BP | GO:1901576 | organic substance biosynthetic process | IEP | Enrichment |
| No external refs found! |