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  5. lcl|VRMN01000001.1_cds_KAA8499574.1_8527

lcl|VRMN01000001.1_cds_KAA8499574.1_8527 (KAA8499574)


Aliases : KAA8499574

Description : Retrovirus-related Pol polyprotein from transposon TNT 1-94


Gene families : OG_01_0000023 (OrthoFinder) Phylogenetic Tree(s): OG0000023_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|VRMN01000001.1_cds_KAA8499574.1_8527

Target Alias Description ECC score Gene Family Method Actions
Cre03.g183950 30786839 Retrovirus-related Pol polyprotein from transposon TNT... 0.02 OrthoFinder
Cz01g34150.t1 No alias Reverse transcriptase, RNA-dependent DNA polymerase... 0.04 OrthoFinder
Cz02g21060.t1 No alias Reverse transcriptase, RNA-dependent DNA polymerase;... 0.04 OrthoFinder
Cz02g21220.t1 No alias Integrase, catalytic core; Reverse transcriptase,... 0.04 OrthoFinder
Cz02g21260.t1 No alias Hypothetical protein 0.03 OrthoFinder
Cz02g21270.t1 No alias Reverse transcriptase, RNA-dependent DNA polymerase... 0.03 OrthoFinder
Cz03g25170.t1 No alias Reverse transcriptase, RNA-dependent DNA polymerase... 0.02 OrthoFinder
Cz03g25200.t1 No alias Reverse transcriptase, RNA-dependent DNA polymerase... 0.03 OrthoFinder
Cz05g10130.t1 No alias Reverse transcriptase, RNA-dependent DNA polymerase;... 0.02 OrthoFinder
Cz12g13100.t1 No alias Reverse transcriptase, RNA-dependent DNA polymerase;... 0.03 OrthoFinder
Cz14g04110.t1 No alias GAG-pre-integrase domain; Integrase, catalytic core... 0.04 OrthoFinder
Cz16g05080.t1 No alias gag-polypeptide of LTR copia-type; Zinc finger,... 0.02 OrthoFinder
Cz17g17240.t1 No alias Hypothetical protein 0.02 OrthoFinder
Cz17g17250.t1 No alias Hypothetical protein 0.02 OrthoFinder
Sro619_g176351.1 No alias Hypothetical protein 0.02 OrthoFinder
UNPLg00762.t1 No alias Hypothetical protein 0.02 OrthoFinder
UNPLg00808.t1 No alias Hypothetical protein 0.02 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8499088.1_8041 KAA8499088 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.08 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8499089.1_8042 KAA8499089 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.11 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8499575.1_8528 KAA8499575 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.12 OrthoFinder
lcl|VRMN01000002.1_cds_KAA8496538.1_267 KAA8496538 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.08 OrthoFinder
lcl|VRMN01000003.1_cds_KAA8495516.1_1514 KAA8495516 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.12 OrthoFinder
lcl|VRMN01000003.1_cds_KAA8495517.1_1515 KAA8495517 Hypothetical protein 0.04 OrthoFinder
lcl|VRMN01000004.1_cds_KAA8494984.1_3514 KAA8494984 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.02 OrthoFinder
lcl|VRMN01000004.1_cds_KAA8494985.1_3515 KAA8494985 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.12 OrthoFinder
lcl|VRMN01000007.1_cds_KAA8493111.1_9412 KAA8493111 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.18 OrthoFinder
lcl|VRMN01000007.1_cds_KAA8493112.1_9413 KAA8493112 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.05 OrthoFinder
lcl|VRMN01000010.1_cds_KAA8492347.1_5530 KAA8492347 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.04 OrthoFinder
lcl|VRMN01000011.1_cds_KAA8491885.1_4893 KAA8491885 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.12 OrthoFinder
lcl|VRMN01000014.1_cds_KAA8491318.1_2319 KAA8491318 Copia protein 0.02 OrthoFinder
lcl|VRMN01000014.1_cds_KAA8491319.1_2320 KAA8491319 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.12 OrthoFinder
lcl|VRMN01000014.1_cds_KAA8491320.1_2321 KAA8491320 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.05 OrthoFinder
lcl|VRMN01000015.1_cds_KAA8491142.1_5770 KAA8491142 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.06 OrthoFinder
lcl|VRMN01000020.1_cds_KAA8490646.1_4688 KAA8490646 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.05 OrthoFinder
lcl|VRMN01000020.1_cds_KAA8490647.1_4689 KAA8490647 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.11 OrthoFinder
lcl|VRMN01000020.1_cds_KAA8490649.1_4691 KAA8490649 Hypothetical protein 0.04 OrthoFinder
lcl|VRMN01000020.1_cds_KAA8490657.1_4699 KAA8490657 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.14 OrthoFinder
lcl|VRMN01000025.1_cds_KAA8490485.1_2847 KAA8490485 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.12 OrthoFinder
lcl|VRMN01000025.1_cds_KAA8490487.1_2849 KAA8490487 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.11 OrthoFinder
lcl|VRMN01000031.1_cds_KAA8490359.1_5749 KAA8490359 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.07 OrthoFinder
lcl|VRMN01000031.1_cds_KAA8490360.1_5750 KAA8490360 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.12 OrthoFinder
lcl|VRMN01000031.1_cds_KAA8490368.1_5758 KAA8490368 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.19 OrthoFinder

Type GO Term Name Evidence Source
BP GO:0015074 DNA integration IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0008270 zinc ion binding IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043169 cation binding IEP Enrichment
MF GO:0046872 metal ion binding IEP Enrichment
MF GO:0046914 transition metal ion binding IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
InterPro domains Description Start Stop
IPR013103 RVT_2 945 1185
IPR025724 GAG-pre-integrase_dom 498 551
IPR001584 Integrase_cat-core 569 683
No external refs found!