lcl|VRMN01000001.1_cds_KAA8499554.1_8507 (KAA8499554)

Aliases : KAA8499554

Description : Transposon Ty3-I Gag-Pol polyprotein

Gene families : OG_01_0003588 (OrthoFinder) Phylogenetic Tree(s): OG0003588_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type Description Actions
Neighborhood HRR: lcl|VRMN01000001.1_cds_KAA8499554.1_8507
Cluster HCCA: Cluster_54

Target Alias Description ECC score Gene Family Method Actions
lcl|VRMN01000001.1_cds_KAA8498456.1_7409 KAA8498456 Retrovirus-related Pol polyprotein from transposon 17.6 0.08 OrthoFinder
lcl|VRMN01000002.1_cds_KAA8496915.1_644 KAA8496915 Hypothetical protein 0.06 OrthoFinder
lcl|VRMN01000017.1_cds_KAA8491006.1_6209 KAA8491006 Transposon Ty3-I Gag-Pol polyprotein 0.1 OrthoFinder
lcl|VRMN01000021.1_cds_KAA8490611.1_5710 KAA8490611 Transposon Ty3-I Gag-Pol polyprotein 0.08 OrthoFinder
lcl|VRMN01000026.1_cds_KAA8490462.1_6408 KAA8490462 Transposon Ty3-I Gag-Pol polyprotein 0.1 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
BP GO:0015074 DNA integration IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0004520 endodeoxyribonuclease activity IEP Enrichment
MF GO:0004536 deoxyribonuclease activity IEP Enrichment
MF GO:0016888 endodeoxyribonuclease activity, producing 5'-phosphomonoesters IEP Enrichment
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP Enrichment
BP GO:0018142 protein-DNA covalent cross-linking IEP Enrichment
BP GO:0018143 nucleic acid-protein covalent cross-linking IEP Enrichment
InterPro domains Description Start Stop
IPR041373 RT_RNaseH 982 1082
IPR001878 Znf_CCHC 375 390
IPR001584 Integrase_cat-core 1258 1368
IPR000477 RT_dom 710 870
IPR041588 Integrase_H2C2 1183 1242
IPR023780 Chromo_domain 1556 1603
No external refs found!