lcl|VRMN01000001.1_cds_KAA8499406.1_8359 (KAA8499406)

Aliases : KAA8499406

Description : Gag-Pol polyprotein

Gene families : OG_01_0002023 (OrthoFinder) Phylogenetic Tree(s): OG0002023_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: lcl\|VRMN01000001.1_cds_KAA8499406.1_8359
Cluster	HCCA: Cluster_21

Target	Alias	Description	ECC score	Gene Family Method
lcl\|VRMN01000001.1_cds_KAA8499408.1_8361	KAA8499408	Retrotransposon gag domain; Zinc finger, CCHC-type...	0.08	OrthoFinder
lcl\|VRMN01000004.1_cds_KAA8494833.1_3363	KAA8494833	Retrotransposon gag domain; Zinc finger, CCHC-type...	0.07	OrthoFinder
lcl\|VRMN01000004.1_cds_KAA8494875.1_3405	KAA8494875	Hypothetical protein	0.04	OrthoFinder
lcl\|VRMN01000004.1_cds_KAA8494877.1_3407	KAA8494877	Retrovirus-related Pol polyprotein from transposon TNT 1-94	0.09	OrthoFinder
lcl\|VRMN01000004.1_cds_KAA8494878.1_3408	KAA8494878	Retrotransposon gag domain; Zinc finger, CCHC-type...	0.08	OrthoFinder
lcl\|VRMN01000010.1_cds_KAA8492110.1_5293	KAA8492110	Hypothetical protein	0.19	OrthoFinder

Type	GO Term	Name	Evidence	Source
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015074	DNA integration	IEA	Interproscan
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0008270	zinc ion binding	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR013103	RVT_2	448	572
IPR001584	Integrase_cat-core	71	172

External Links

No external refs found!