lcl|VRMN01000001.1_cds_KAA8499353.1_8306 (KAA8499353)

Aliases : KAA8499353

Description : Copia protein

Gene families : OG_01_0000420 (OrthoFinder) Phylogenetic Tree(s): OG0000420_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: lcl\|VRMN01000001.1_cds_KAA8499353.1_8306
Cluster	HCCA: Cluster_165

Target	Alias	Description	ECC score	Gene Family Method
lcl\|VRMN01000001.1_cds_KAA8498719.1_7672	KAA8498719	Retrovirus-related Pol polyprotein from transposon TNT 1-94	0.2	OrthoFinder
lcl\|VRMN01000008.1_cds_KAA8493086.1_2822	KAA8493086	Retrovirus-related Pol polyprotein from transposon TNT 1-94	0.08	OrthoFinder
lcl\|VRMN01000008.1_cds_KAA8493090.1_2826	KAA8493090	Retrotransposon gag domain [Interproscan].	0.05	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0008270	zinc ion binding	IEA	Interproscan
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR001878	Znf_CCHC	340	356
IPR005162	Retrotrans_gag_dom	158	246

External Links

No external refs found!