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  5. lcl|VRMN01000001.1_cds_KAA8499350.1_8303

lcl|VRMN01000001.1_cds_KAA8499350.1_8303 (KAA8499350)


Aliases : KAA8499350

Description : Splicing factor U2af small subunit A


Gene families : OG_01_0003723 (OrthoFinder) Phylogenetic Tree(s): OG0003723_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|VRMN01000001.1_cds_KAA8499350.1_8303
Cluster HCCA: Cluster_65

Target Alias Description ECC score Gene Family Method Actions
EOD23452 No alias Zinc finger, CCCH-type [Interproscan]. 0.02 OrthoFinder
EOD31057 No alias Zinc finger, CCCH-type [Interproscan]. 0.02 OrthoFinder
Sro271_g104570.1 Contig2573.g20890 U2AF 26 kDa subunit 0.01 OrthoFinder
XM_003063179.1 MicpuC2_36315, 36315 Zinc finger, CCCH-type; RNA recognition motif domain... 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0046872 metal ion binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000123 histone acetyltransferase complex IEP Enrichment
CC GO:0000178 exosome (RNase complex) IEP Enrichment
MF GO:0000339 RNA cap binding IEP Enrichment
MF GO:0000340 RNA 7-methylguanosine cap binding IEP Enrichment
MF GO:0003729 mRNA binding IEP Enrichment
BP GO:0006473 protein acetylation IEP Enrichment
BP GO:0006475 internal protein amino acid acetylation IEP Enrichment
BP GO:0016569 covalent chromatin modification IEP Enrichment
BP GO:0016570 histone modification IEP Enrichment
BP GO:0016573 histone acetylation IEP Enrichment
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP Enrichment
BP GO:0018205 peptidyl-lysine modification IEP Enrichment
BP GO:0018393 internal peptidyl-lysine acetylation IEP Enrichment
BP GO:0018394 peptidyl-lysine acetylation IEP Enrichment
BP GO:0022900 electron transport chain IEP Enrichment
CC GO:0030880 RNA polymerase complex IEP Enrichment
CC GO:0031248 protein acetyltransferase complex IEP Enrichment
BP GO:0032774 RNA biosynthetic process IEP Enrichment
BP GO:0043543 protein acylation IEP Enrichment
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP Enrichment
CC GO:0140535 intracellular protein-containing complex IEP Enrichment
CC GO:1902493 acetyltransferase complex IEP Enrichment
CC GO:1902494 catalytic complex IEP Enrichment
CC GO:1905354 exoribonuclease complex IEP Enrichment
CC GO:1990234 transferase complex IEP Enrichment
InterPro domains Description Start Stop
IPR000571 Znf_CCCH 4 28
No external refs found!