lcl|VRMN01000001.1_cds_KAA8499338.1_8291 (KAA8499338)

Aliases : KAA8499338

Description : Copia protein

Gene families : OG_01_0000588 (OrthoFinder) Phylogenetic Tree(s): OG0000588_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: lcl\|VRMN01000001.1_cds_KAA8499338.1_8291
Cluster	HCCA: Cluster_44

Target	Alias	Description	ECC score	Gene Family Method
lcl\|VRMN01000001.1_cds_KAA8497911.1_6864	KAA8497911	Retrovirus-related Pol polyprotein from transposon TNT 1-94	0.08	OrthoFinder
lcl\|VRMN01000001.1_cds_KAA8498096.1_7049	KAA8498096	Retrovirus-related Pol polyprotein from transposon TNT 1-94	0.06	OrthoFinder
lcl\|VRMN01000013.1_cds_KAA8491561.1_6371	KAA8491561	Retrovirus-related Pol polyprotein from transposon TNT 1-94	0.05	OrthoFinder
lcl\|VRMN01000014.1_cds_KAA8491285.1_2286	KAA8491285	Copia protein	0.07	OrthoFinder
lcl\|VRMN01000014.1_cds_KAA8491287.1_2288	KAA8491287	Retrovirus-related Pol polyprotein from transposon TNT 1-94	0.05	OrthoFinder

Type	GO Term	Name	Evidence	Source
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015074	DNA integration	IEA	Interproscan
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR005162	Retrotrans_gag_dom	123	211
IPR001584	Integrase_cat-core	514	611
IPR013103	RVT_2	918	1148

External Links

No external refs found!