lcl|VRMN01000001.1_cds_KAA8499275.1_8228 (KAA8499275)

Aliases : KAA8499275

Description : ABC transporter F family member 2

Gene families : OG_01_0000132 (OrthoFinder) Phylogenetic Tree(s): OG0000132_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: lcl\|VRMN01000001.1_cds_KAA8499275.1_8228
Cluster	HCCA: Cluster_2

Target	Alias	Description	ECC score	Gene Family Method
Cpa\|evm.model.tig00000383.51	tig00000383_g24665.t1	ABC transporter F family member 1 OS=Arabidopsis thaliana	0.02	OrthoFinder
Cpa\|evm.model.tig00020629.98	tig00020629_g12419.t1	ABC transporter F family member 3 OS=Arabidopsis thaliana	0.01	OrthoFinder
EOD13146	No alias	ABC transporter-like; ABC-transporter extension domain...	0.02	OrthoFinder
OT_05G02420.1	No alias	ABC-transporter extension domain; ABC transporter-like;...	0.02	OrthoFinder
XM_002502487.1	MICPUN_58625, 58625	ABC-transporter extension domain; ZC3H15/TMA46 family,...	0.02	OrthoFinder
XM_002503388.1	MICPUN_83355, 83355	ATP-binding cassette superfamily	0.02	OrthoFinder
XM_002505228.1	MICPUN_62615, 62615	ABC transporter	0.03	OrthoFinder
lcl\|BLLF01000100.1_cds_GFH07516.1_1993	HaLaN_02328, GFH07516	ABC transporter-like [Interproscan].	0.02	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0016887	ATPase	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
CC	GO:0000228	nuclear chromosome	IEP	Enrichment
MF	GO:0004133	glycogen debranching enzyme activity	IEP	Enrichment
MF	GO:0004134	4-alpha-glucanotransferase activity	IEP	Enrichment
MF	GO:0004478	methionine adenosyltransferase activity	IEP	Enrichment
MF	GO:0005548	phospholipid transporter activity	IEP	Enrichment
CC	GO:0005694	chromosome	IEP	Enrichment
BP	GO:0006338	chromatin remodeling	IEP	Enrichment
BP	GO:0006556	S-adenosylmethionine biosynthetic process	IEP	Enrichment
BP	GO:0006720	isoprenoid metabolic process	IEP	Enrichment
BP	GO:0008299	isoprenoid biosynthetic process	IEP	Enrichment
BP	GO:0015748	organophosphate ester transport	IEP	Enrichment
BP	GO:0015914	phospholipid transport	IEP	Enrichment
BP	GO:0044272	sulfur compound biosynthetic process	IEP	Enrichment
BP	GO:0046500	S-adenosylmethionine metabolic process	IEP	Enrichment
MF	GO:0046912	acyltransferase, acyl groups converted into alkyl on transfer	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR032781	ABC_tran_Xtn	297	377
IPR003439	ABC_transporter-like_ATP-bd	413	545
IPR003439	ABC_transporter-like_ATP-bd	99	256

External Links

No external refs found!