lcl|VRMN01000001.1_cds_KAA8499259.1_8212 (KAA8499259)

Aliases : KAA8499259

Description : DNA replication licensing factor mcm6

Gene families : OG_01_0000321 (OrthoFinder) Phylogenetic Tree(s): OG0000321_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: lcl\|VRMN01000001.1_cds_KAA8499259.1_8212
Cluster	HCCA: Cluster_35

Target	Alias	Description	ECC score	Gene Family Method
Cpa\|evm.model.tig00000241.38	tig00000241_g20896.t1	Cell cycle.interphase.DNA replication.preinitiation.MCM...	0.06	OrthoFinder
Cpa\|evm.model.tig00020918.5	tig00020918_g15883.t1	Cell cycle.interphase.DNA replication.preinitiation.MCM...	0.06	OrthoFinder
Cre03.g178650	30786765, MCM6	Cell cycle.interphase.DNA replication.preinitiation.MCM...	0.1	OrthoFinder
Cre10.g455850	30790894, MCM7	Cell cycle.interphase.DNA replication.preinitiation.MCM...	0.12	OrthoFinder
Cz01g28090.t1	No alias	MCM, AAA-lid domain; MCM OB domain; MCM domain; Mcm6,...	0.07	OrthoFinder
Cz10g20280.t1	No alias	MCM N-terminal domain; MCM, AAA-lid domain; MCM OB...	0.08	OrthoFinder
EOD16317	No alias	MCM OB domain; MCM, AAA-lid domain; MCM N-terminal...	0.15	OrthoFinder
EOD19125	No alias	MCM OB domain; MCM, AAA-lid domain; MCM N-terminal...	0.15	OrthoFinder
EOD20267	No alias	MCM OB domain; MCM, AAA-lid domain; MCM domain [Interproscan].	0.02	OrthoFinder
EOD29724	No alias	MCM OB domain; MCM, AAA-lid domain; MCM N-terminal...	0.1	OrthoFinder
OT_01G02550.1	No alias	MCM, AAA-lid domain; MCM OB domain; Mcm6, C-terminal...	0.07	OrthoFinder
OT_05G01710.1	No alias	MCM, AAA-lid domain; MCM domain; MCM OB domain [Interproscan].	0.08	OrthoFinder
PTI_06G04900.1	No alias	MCM domain; MCM, AAA-lid domain; MCM OB domain [Interproscan].	0.03	OrthoFinder
Sro1053_g235850.1	Contig4118.g31456	Zygotic DNA replication licensing factor mcm3	0.02	OrthoFinder
Sro397_g134560.1	Contig157.g1794	Helicase MCM9	0.02	OrthoFinder
TP05G04710.1	No alias	MCM, AAA-lid domain; MCM OB domain; MCM domain [Interproscan].	0.02	OrthoFinder
Transcript_contig_56242	56242	MCM domain; MCM N-terminal domain; MCM OB domain [Interproscan].	0.04	OrthoFinder
Transcript_contig_67540	67540	MCM, AAA-lid domain; MCM domain; MCM N-terminal domain;...	0.06	OrthoFinder
Vocar.0015s0342.1	32899062	MCM OB domain; MCM N-terminal domain; Mcm6, C-terminal...	0.04	OrthoFinder
Vocar.0028s0155.1	32895592	MCM, AAA-lid domain; MCM N-terminal domain; MCM OB...	0.04	OrthoFinder
XM_003056070.1	MicpuC2_55580, 55580	MCM, AAA-lid domain; MCM domain; Mcm6, C-terminal...	0.02	OrthoFinder
lcl\|BLLF01001170.1_cds_GFH17581.1_12058	HaLaN_14243, GFH17581	DNA replication licensing factor MCM7	0.06	OrthoFinder
lcl\|BLLF01002739.1_cds_GFH25166.1_19643	HaLaN_23090, GFH25166	DNA helicase	0.06	OrthoFinder
lcl\|BLLF01003181.1_cds_GFH26619.1_21096	HaLaN_24796, GFH26619	DNA replication licensing factor MCM7	0.02	OrthoFinder
lcl\|LHPG02000007.1_cds_PRW57124.1_9129	PRW57124	DNA replication licensing factor MCM7	0.06	OrthoFinder
lcl\|LHPG02000018.1_cds_PRW33036.1_3726	PRW33036	DNA replication licensing factor Mcm6	0.04	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006270	DNA replication initiation	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003712	transcription coregulator activity	IEP	Enrichment
MF	GO:0003713	transcription coactivator activity	IEP	Enrichment
MF	GO:0003887	DNA-directed DNA polymerase activity	IEP	Enrichment
MF	GO:0003896	DNA primase activity	IEP	Enrichment
CC	GO:0005634	nucleus	IEP	Enrichment
BP	GO:0006260	DNA replication	IEP	Enrichment
BP	GO:0006269	DNA replication, synthesis of RNA primer	IEP	Enrichment
BP	GO:0006275	regulation of DNA replication	IEP	Enrichment
BP	GO:0009058	biosynthetic process	IEP	Enrichment
BP	GO:0009059	macromolecule biosynthetic process	IEP	Enrichment
BP	GO:0010639	negative regulation of organelle organization	IEP	Enrichment
MF	GO:0016538	cyclin-dependent protein serine/threonine kinase regulator activity	IEP	Enrichment
MF	GO:0016779	nucleotidyltransferase activity	IEP	Enrichment
MF	GO:0019207	kinase regulator activity	IEP	Enrichment
MF	GO:0019887	protein kinase regulator activity	IEP	Enrichment
BP	GO:0032774	RNA biosynthetic process	IEP	Enrichment
BP	GO:0032780	negative regulation of ATPase activity	IEP	Enrichment
BP	GO:0033043	regulation of organelle organization	IEP	Enrichment
BP	GO:0033044	regulation of chromosome organization	IEP	Enrichment
MF	GO:0034061	DNA polymerase activity	IEP	Enrichment
BP	GO:0034645	cellular macromolecule biosynthetic process	IEP	Enrichment
BP	GO:0034654	nucleobase-containing compound biosynthetic process	IEP	Enrichment
CC	GO:0042555	MCM complex	IEP	Enrichment
BP	GO:0043086	negative regulation of catalytic activity	IEP	Enrichment
CC	GO:0043227	membrane-bounded organelle	IEP	Enrichment
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	Enrichment
BP	GO:0043462	regulation of ATPase activity	IEP	Enrichment
BP	GO:0044092	negative regulation of molecular function	IEP	Enrichment
BP	GO:0044249	cellular biosynthetic process	IEP	Enrichment
BP	GO:0048519	negative regulation of biological process	IEP	Enrichment
BP	GO:0048523	negative regulation of cellular process	IEP	Enrichment
BP	GO:0051095	regulation of helicase activity	IEP	Enrichment
BP	GO:0051097	negative regulation of helicase activity	IEP	Enrichment
BP	GO:0051128	regulation of cellular component organization	IEP	Enrichment
BP	GO:0051129	negative regulation of cellular component organization	IEP	Enrichment
BP	GO:1901576	organic substance biosynthetic process	IEP	Enrichment
BP	GO:1905462	regulation of DNA duplex unwinding	IEP	Enrichment
BP	GO:1905463	negative regulation of DNA duplex unwinding	IEP	Enrichment
BP	GO:1905774	regulation of DNA helicase activity	IEP	Enrichment
BP	GO:1905775	negative regulation of DNA helicase activity	IEP	Enrichment
BP	GO:2001251	negative regulation of chromosome organization	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR033762	MCM_OB	151	278
IPR027925	MCM_N	28	144
IPR041562	MCM_lid	642	728
IPR041024	Mcm6_C	783	888
IPR001208	MCM_dom	371	593

External Links

No external refs found!

lcl|VRMN01000001.1_cds_KAA8499259.1_8212 (KAA8499259)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation