lcl|VRMN01000001.1_cds_KAA8499136.1_8089 (KAA8499136)


Aliases : KAA8499136

Description : Centromere/microtubule-binding protein CBF5


Gene families : OG_01_0003314 (OrthoFinder) Phylogenetic Tree(s): OG0003314_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|VRMN01000001.1_cds_KAA8499136.1_8089
Cluster HCCA: Cluster_4

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000553.10 tig00000553_g2080.t1 RNA processing.RNA modification.pseudouridylation.H/ACA... 0.02 OrthoFinder
Cre03.g172950 30787716, CBF5 RNA processing.RNA modification.pseudouridylation.H/ACA... 0.04 OrthoFinder
Sro31_g020400.1 Contig420.g5635 Centromere/microtubule-binding protein CBF5 0.01 OrthoFinder
lcl|BLLF01001744.1_cds_GFH21015.1_15492 HaLaN_18231, GFH21015 PUA domain-containing protein 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
BP GO:0006396 RNA processing IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Enrichment
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
BP GO:0006364 rRNA processing IEP Enrichment
BP GO:0006418 tRNA aminoacylation for protein translation IEP Enrichment
BP GO:0016072 rRNA metabolic process IEP Enrichment
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
BP GO:0043038 amino acid activation IEP Enrichment
BP GO:0043039 tRNA aminoacylation IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
InterPro domains Description Start Stop
IPR002478 PUA 275 348
IPR012960 Dyskerin-like 25 82
IPR002501 PsdUridine_synth_N 86 204
IPR032819 TruB_C 205 271
No external refs found!