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  5. lcl|VRMN01000001.1_cds_KAA8499113.1_8066

lcl|VRMN01000001.1_cds_KAA8499113.1_8066 (KAA8499113)


Aliases : KAA8499113

Description : AP-1 complex subunit sigma-2


Gene families : OG_01_0000426 (OrthoFinder) Phylogenetic Tree(s): OG0000426_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|VRMN01000001.1_cds_KAA8499113.1_8066
Cluster HCCA: Cluster_74

Target Alias Description ECC score Gene Family Method Actions
Dusal.0208s00019.1 33194114 AP complex, mu/sigma subunit [Interproscan]. 0.02 OrthoFinder
Sro782_g201730.1 Contig2391.g19597 AP-2 complex subunit sigma 0.04 OrthoFinder
Sro9_g007570.1 Contig4120.g31525 AP-1 complex subunit sigma 0.01 OrthoFinder
XM_002503497.1 MICPUN_108582, 108582 AP complex, mu/sigma subunit [Interproscan]. 0.02 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003916 DNA topoisomerase activity IEP Enrichment
MF GO:0003917 DNA topoisomerase type I (single strand cut, ATP-independent) activity IEP Enrichment
MF GO:0004298 threonine-type endopeptidase activity IEP Enrichment
CC GO:0005839 proteasome core complex IEP Enrichment
BP GO:0006265 DNA topological change IEP Enrichment
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP Enrichment
BP GO:0006996 organelle organization IEP Enrichment
MF GO:0008374 O-acyltransferase activity IEP Enrichment
BP GO:0017006 protein-tetrapyrrole linkage IEP Enrichment
BP GO:0017007 protein-bilin linkage IEP Enrichment
BP GO:0017009 protein-phycocyanobilin linkage IEP Enrichment
CC GO:0019773 proteasome core complex, alpha-subunit complex IEP Enrichment
BP GO:0019941 modification-dependent protein catabolic process IEP Enrichment
BP GO:0043632 modification-dependent macromolecule catabolic process IEP Enrichment
BP GO:0044265 cellular macromolecule catabolic process IEP Enrichment
BP GO:0051276 chromosome organization IEP Enrichment
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEP Enrichment
MF GO:0070003 threonine-type peptidase activity IEP Enrichment
BP GO:0071103 DNA conformation change IEP Enrichment
InterPro domains Description Start Stop
IPR022775 AP_mu_sigma_su 1 139
No external refs found!