lcl|VRMN01000001.1_cds_KAA8499089.1_8042 (KAA8499089)


Aliases : KAA8499089

Description : Retrovirus-related Pol polyprotein from transposon TNT 1-94


Gene families : OG_01_0000023 (OrthoFinder) Phylogenetic Tree(s): OG0000023_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|VRMN01000001.1_cds_KAA8499089.1_8042
Cluster HCCA: Cluster_53

Target Alias Description ECC score Gene Family Method Actions
Cz01g34150.t1 No alias Reverse transcriptase, RNA-dependent DNA polymerase... 0.03 OrthoFinder
Cz02g21060.t1 No alias Reverse transcriptase, RNA-dependent DNA polymerase;... 0.03 OrthoFinder
Cz02g21220.t1 No alias Integrase, catalytic core; Reverse transcriptase,... 0.03 OrthoFinder
Cz02g21260.t1 No alias Hypothetical protein 0.02 OrthoFinder
Cz02g21270.t1 No alias Reverse transcriptase, RNA-dependent DNA polymerase... 0.02 OrthoFinder
Cz03g25170.t1 No alias Reverse transcriptase, RNA-dependent DNA polymerase... 0.02 OrthoFinder
Cz03g25200.t1 No alias Reverse transcriptase, RNA-dependent DNA polymerase... 0.02 OrthoFinder
Cz12g13100.t1 No alias Reverse transcriptase, RNA-dependent DNA polymerase;... 0.02 OrthoFinder
Cz14g04110.t1 No alias GAG-pre-integrase domain; Integrase, catalytic core... 0.03 OrthoFinder
Cz16g05080.t1 No alias gag-polypeptide of LTR copia-type; Zinc finger,... 0.01 OrthoFinder
Cz17g17240.t1 No alias Hypothetical protein 0.02 OrthoFinder
Cz17g17250.t1 No alias Hypothetical protein 0.02 OrthoFinder
OT_19G00550.1 No alias Reverse transcriptase, RNA-dependent DNA polymerase... 0.02 OrthoFinder
UNPLg00808.t1 No alias Hypothetical protein 0.01 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8499088.1_8041 KAA8499088 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.03 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8499574.1_8527 KAA8499574 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.11 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8499576.1_8529 KAA8499576 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.11 OrthoFinder
lcl|VRMN01000002.1_cds_KAA8496538.1_267 KAA8496538 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.03 OrthoFinder
lcl|VRMN01000003.1_cds_KAA8495517.1_1515 KAA8495517 Hypothetical protein 0.03 OrthoFinder
lcl|VRMN01000004.1_cds_KAA8494984.1_3514 KAA8494984 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.01 OrthoFinder
lcl|VRMN01000007.1_cds_KAA8493111.1_9412 KAA8493111 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.08 OrthoFinder
lcl|VRMN01000007.1_cds_KAA8493112.1_9413 KAA8493112 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.04 OrthoFinder
lcl|VRMN01000009.1_cds_KAA8492487.1_9180 KAA8492487 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.11 OrthoFinder
lcl|VRMN01000010.1_cds_KAA8492347.1_5530 KAA8492347 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.01 OrthoFinder
lcl|VRMN01000011.1_cds_KAA8491886.1_4894 KAA8491886 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.11 OrthoFinder
lcl|VRMN01000014.1_cds_KAA8491320.1_2321 KAA8491320 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.04 OrthoFinder
lcl|VRMN01000020.1_cds_KAA8490646.1_4688 KAA8490646 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.03 OrthoFinder
lcl|VRMN01000020.1_cds_KAA8490649.1_4691 KAA8490649 Hypothetical protein 0.03 OrthoFinder
lcl|VRMN01000020.1_cds_KAA8490657.1_4699 KAA8490657 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.04 OrthoFinder
lcl|VRMN01000031.1_cds_KAA8490359.1_5749 KAA8490359 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.04 OrthoFinder
lcl|VRMN01000031.1_cds_KAA8490360.1_5750 KAA8490360 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.06 OrthoFinder
lcl|VRMN01000031.1_cds_KAA8490368.1_5758 KAA8490368 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.08 OrthoFinder

Type GO Term Name Evidence Source
BP GO:0015074 DNA integration IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0004806 triglyceride lipase activity IEP Enrichment
BP GO:0009092 homoserine metabolic process IEP Enrichment
MF GO:0016298 lipase activity IEP Enrichment
MF GO:0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor IEP Enrichment
BP GO:0019346 transsulfuration IEP Enrichment
MF GO:0019842 vitamin binding IEP Enrichment
MF GO:0030170 pyridoxal phosphate binding IEP Enrichment
BP GO:0050667 homocysteine metabolic process IEP Enrichment
MF GO:0070279 vitamin B6 binding IEP Enrichment
InterPro domains Description Start Stop
IPR025724 GAG-pre-integrase_dom 498 551
IPR013103 RVT_2 945 1185
IPR001584 Integrase_cat-core 569 683
No external refs found!