1. Home
  2. Species
  3. Porphyridium purpureum
  4. Sequence
  5. lcl|VRMN01000001.1_cds_KAA8499001.1_7954

lcl|VRMN01000001.1_cds_KAA8499001.1_7954 (KAA8499001)


Aliases : KAA8499001

Description : 1-deoxy-D-xylulose 5-phosphate reductoisomerase


Gene families : OG_01_0001587 (OrthoFinder) Phylogenetic Tree(s): OG0001587_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|VRMN01000001.1_cds_KAA8499001.1_7954
Cluster HCCA: Cluster_27

Target Alias Description ECC score Gene Family Method Actions
Cre12.g546050 30793428, DXR1 Secondary metabolism.terpenoids.methylerythritol... 0.03 OrthoFinder
EOD07466 No alias 1-deoxy-D-xylulose 5-phosphate reductoisomerase [Ensembl]. 0.03 OrthoFinder
OT_04G03300.1 No alias DXP reductoisomerase C-terminal domain;... 0.05 OrthoFinder
PTI_01G10890.1 No alias DXP reductoisomerase C-terminal domain;... 0.03 OrthoFinder
Sro1019_g232030.1 Contig406.g5524 Deoxy-D-xylulose 5-phosphate reductoisomerase 0.04 OrthoFinder
XM_002504067.1 MICPUN_108708, 108708 1-deoxy-D-xylulose 5-phosphate reductoisomerase,... 0.02 OrthoFinder
XM_003059590.1 MicpuC2_47613, 47613 DXP reductoisomerase C-terminal domain;... 0.02 OrthoFinder
lcl|LHPG02000026.1_cds_PRW18292.1_5797 PRW18292 1-deoxy-D-xylulose 5-phosphate reductoisomerase 0.07 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
BP GO:0055114 obsolete oxidation-reduction process IEA Interproscan
MF GO:0070402 NADPH binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP Enrichment
MF GO:0004109 coproporphyrinogen oxidase activity IEP Enrichment
MF GO:0004853 uroporphyrinogen decarboxylase activity IEP Enrichment
BP GO:0006778 porphyrin-containing compound metabolic process IEP Enrichment
BP GO:0006779 porphyrin-containing compound biosynthetic process IEP Enrichment
BP GO:0010207 photosystem II assembly IEP Enrichment
MF GO:0016151 nickel cation binding IEP Enrichment
MF GO:0016634 oxidoreductase activity, acting on the CH-CH group of donors, oxygen as acceptor IEP Enrichment
BP GO:0017038 protein import IEP Enrichment
BP GO:0033013 tetrapyrrole metabolic process IEP Enrichment
BP GO:0033014 tetrapyrrole biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR013644 DXP_reductoisomerase_C 285 368
IPR013512 DXP_reductoisomerase_N 143 271
IPR026877 DXPR_C 400 517
No external refs found!