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  5. lcl|VRMN01000001.1_cds_KAA8498945.1_7898

lcl|VRMN01000001.1_cds_KAA8498945.1_7898 (KAA8498945)


Aliases : KAA8498945

Description : E3 ubiquitin-protein ligase


Gene families : OG_01_0000005 (OrthoFinder) Phylogenetic Tree(s): OG0000005_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|VRMN01000001.1_cds_KAA8498945.1_7898
Cluster HCCA: Cluster_27

Target Alias Description ECC score Gene Family Method Actions
OT_04G04210.1 No alias Zinc finger, RING-type; E3 ubiquitin-protein ligase... 0.02 OrthoFinder
OT_13G02020.1 No alias Zinc finger, RING-type [Interproscan]. 0.02 OrthoFinder
PTI_15G03630.1 No alias Zinc finger, RING-type [Interproscan]. 0.02 OrthoFinder
Sro194_g082920.1 Contig237.g2887 Protein ligase RNF181 0.01 OrthoFinder
Sro779_g201390.1 Contig4354.g32829 Zinc finger, RING-type [Interproscan]. 0.01 OrthoFinder
SymbC1.scaffold449.5 449.5 Zinc finger, RING-type [Interproscan]. 0.02 OrthoFinder
SymbC1.scaffold809.9 809.9 Zinc finger, RING-type [Interproscan]. 0.01 OrthoFinder
TP02G01130.1 No alias Zinc finger, RING-type [Interproscan]. 0.02 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000097 sulfur amino acid biosynthetic process IEP Enrichment
CC GO:0000123 histone acetyltransferase complex IEP Enrichment
CC GO:0000124 SAGA complex IEP Enrichment
MF GO:0003697 single-stranded DNA binding IEP Enrichment
MF GO:0003713 transcription coactivator activity IEP Enrichment
MF GO:0004594 pantothenate kinase activity IEP Enrichment
CC GO:0005643 nuclear pore IEP Enrichment
CC GO:0005669 transcription factor TFIID complex IEP Enrichment
BP GO:0006405 RNA export from nucleus IEP Enrichment
BP GO:0006406 mRNA export from nucleus IEP Enrichment
BP GO:0006534 cysteine metabolic process IEP Enrichment
BP GO:0006535 cysteine biosynthetic process from serine IEP Enrichment
BP GO:0006563 L-serine metabolic process IEP Enrichment
BP GO:0006913 nucleocytoplasmic transport IEP Enrichment
MF GO:0008374 O-acyltransferase activity IEP Enrichment
MF GO:0009001 serine O-acetyltransferase activity IEP Enrichment
BP GO:0009069 serine family amino acid metabolic process IEP Enrichment
BP GO:0009070 serine family amino acid biosynthetic process IEP Enrichment
BP GO:0009891 positive regulation of biosynthetic process IEP Enrichment
BP GO:0009893 positive regulation of metabolic process IEP Enrichment
BP GO:0010557 positive regulation of macromolecule biosynthetic process IEP Enrichment
BP GO:0010604 positive regulation of macromolecule metabolic process IEP Enrichment
BP GO:0015931 nucleobase-containing compound transport IEP Enrichment
BP GO:0015936 coenzyme A metabolic process IEP Enrichment
BP GO:0015937 coenzyme A biosynthetic process IEP Enrichment
MF GO:0016412 serine O-acyltransferase activity IEP Enrichment
MF GO:0016413 O-acetyltransferase activity IEP Enrichment
BP GO:0018142 protein-DNA covalent cross-linking IEP Enrichment
BP GO:0018143 nucleic acid-protein covalent cross-linking IEP Enrichment
BP GO:0019344 cysteine biosynthetic process IEP Enrichment
CC GO:0031248 protein acetyltransferase complex IEP Enrichment
BP GO:0031325 positive regulation of cellular metabolic process IEP Enrichment
BP GO:0031328 positive regulation of cellular biosynthetic process IEP Enrichment
CC GO:0031965 nuclear membrane IEP Enrichment
BP GO:0033865 nucleoside bisphosphate metabolic process IEP Enrichment
BP GO:0033866 nucleoside bisphosphate biosynthetic process IEP Enrichment
BP GO:0033875 ribonucleoside bisphosphate metabolic process IEP Enrichment
BP GO:0034030 ribonucleoside bisphosphate biosynthetic process IEP Enrichment
BP GO:0034032 purine nucleoside bisphosphate metabolic process IEP Enrichment
BP GO:0034033 purine nucleoside bisphosphate biosynthetic process IEP Enrichment
BP GO:0045893 positive regulation of transcription, DNA-templated IEP Enrichment
BP GO:0045935 positive regulation of nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0048518 positive regulation of biological process IEP Enrichment
BP GO:0048522 positive regulation of cellular process IEP Enrichment
BP GO:0048878 chemical homeostasis IEP Enrichment
BP GO:0050657 nucleic acid transport IEP Enrichment
BP GO:0050658 RNA transport IEP Enrichment
BP GO:0051028 mRNA transport IEP Enrichment
BP GO:0051168 nuclear export IEP Enrichment
BP GO:0051169 nuclear transport IEP Enrichment
BP GO:0051173 positive regulation of nitrogen compound metabolic process IEP Enrichment
BP GO:0051236 establishment of RNA localization IEP Enrichment
BP GO:0051254 positive regulation of RNA metabolic process IEP Enrichment
BP GO:0055088 lipid homeostasis IEP Enrichment
CC GO:0070461 SAGA-type complex IEP Enrichment
CC GO:0090575 RNA polymerase II transcription regulator complex IEP Enrichment
CC GO:0140513 nuclear protein-containing complex IEP Enrichment
CC GO:1902493 acetyltransferase complex IEP Enrichment
BP GO:1902680 positive regulation of RNA biosynthetic process IEP Enrichment
BP GO:1903508 positive regulation of nucleic acid-templated transcription IEP Enrichment
CC GO:1905368 peptidase complex IEP Enrichment
InterPro domains Description Start Stop
IPR001841 Znf_RING 102 147
No external refs found!