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  5. lcl|VRMN01000001.1_cds_KAA8498878.1_7831

lcl|VRMN01000001.1_cds_KAA8498878.1_7831 (KAA8498878)


Aliases : KAA8498878

Description : Transposon Ty3-I Gag-Pol polyprotein


Gene families : OG_01_0000071 (OrthoFinder) Phylogenetic Tree(s): OG0000071_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Type Description Actions
Neighborhood HRR: lcl|VRMN01000001.1_cds_KAA8498878.1_7831
Cluster HCCA: Cluster_17

Target Alias Description ECC score Gene Family Method Actions
lcl|VRMN01000001.1_cds_KAA8497578.1_6531 KAA8497578 Transposon Ty3-I Gag-Pol polyprotein 0.1 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8498182.1_7135 KAA8498182 Hypothetical protein 0.06 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8498457.1_7410 KAA8498457 Transposon Ty3-I Gag-Pol polyprotein 0.06 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8498876.1_7829 KAA8498876 Transposon Ty3-I Gag-Pol polyprotein 0.03 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8498879.1_7832 KAA8498879 Transposon Ty3-I Gag-Pol polyprotein 0.14 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8499405.1_8358 KAA8499405 Retrotransposon-derived protein PEG10 0.08 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8499909.1_8862 KAA8499909 Transposon Ty3-I Gag-Pol polyprotein 0.05 OrthoFinder
lcl|VRMN01000002.1_cds_KAA8497004.1_733 KAA8497004 Transposon Ty3-I Gag-Pol polyprotein 0.1 OrthoFinder
lcl|VRMN01000003.1_cds_KAA8495211.1_1209 KAA8495211 Transposon Ty3-I Gag-Pol polyprotein 0.12 OrthoFinder
lcl|VRMN01000003.1_cds_KAA8495213.1_1211 KAA8495213 Transposon Ty3-I Gag-Pol polyprotein 0.03 OrthoFinder
lcl|VRMN01000003.1_cds_KAA8495319.1_1317 KAA8495319 Transposon Ty3-I Gag-Pol polyprotein 0.11 OrthoFinder
lcl|VRMN01000003.1_cds_KAA8495320.1_1318 KAA8495320 Retrotransposon-derived protein PEG10 0.15 OrthoFinder
lcl|VRMN01000003.1_cds_KAA8495820.1_1818 KAA8495820 Transposon Ty3-I Gag-Pol polyprotein 0.04 OrthoFinder
lcl|VRMN01000004.1_cds_KAA8494624.1_3154 KAA8494624 Transposon Ty3-I Gag-Pol polyprotein 0.05 OrthoFinder
lcl|VRMN01000004.1_cds_KAA8494670.1_3200 KAA8494670 Transposon Ty3-I Gag-Pol polyprotein 0.05 OrthoFinder
lcl|VRMN01000004.1_cds_KAA8494765.1_3295 KAA8494765 Transposon Ty3-I Gag-Pol polyprotein 0.04 OrthoFinder
lcl|VRMN01000006.1_cds_KAA8493487.1_4249 KAA8493487 Transposon Ty3-I Gag-Pol polyprotein 0.06 OrthoFinder
lcl|VRMN01000006.1_cds_KAA8493809.1_4571 KAA8493809 Transposon Ty3-I Gag-Pol polyprotein 0.04 OrthoFinder
lcl|VRMN01000007.1_cds_KAA8493298.1_9599 KAA8493298 Transposon Ty3-I Gag-Pol polyprotein 0.03 OrthoFinder
lcl|VRMN01000009.1_cds_KAA8492702.1_9395 KAA8492702 Transposon Ty3-I Gag-Pol polyprotein 0.04 OrthoFinder
lcl|VRMN01000012.1_cds_KAA8491590.1_5058 KAA8491590 Transposon Ty3-I Gag-Pol polyprotein 0.11 OrthoFinder
lcl|VRMN01000014.1_cds_KAA8491407.1_2408 KAA8491407 Transposon Ty3-I Gag-Pol polyprotein 0.05 OrthoFinder
lcl|VRMN01000016.1_cds_KAA8491014.1_9771 KAA8491014 Transposon Ty3-I Gag-Pol polyprotein 0.04 OrthoFinder
lcl|VRMN01000017.1_cds_KAA8491004.1_6207 KAA8491004 Hypothetical protein 0.27 OrthoFinder
lcl|VRMN01000018.1_cds_KAA8490791.1_5563 KAA8490791 Transposon Ty3-G Gag-Pol polyprotein 0.11 OrthoFinder
lcl|VRMN01000021.1_cds_KAA8490612.1_5711 KAA8490612 Transposon Ty3-I Gag-Pol polyprotein 0.11 OrthoFinder
lcl|VRMN01000023.1_cds_KAA8490532.1_5898 KAA8490532 Transposon Ty3-I Gag-Pol polyprotein 0.17 OrthoFinder
lcl|VRMN01000026.1_cds_KAA8490460.1_6406 KAA8490460 Hypothetical protein 0.27 OrthoFinder
lcl|VRMN01000028.1_cds_KAA8490418.1_5041 KAA8490418 Transposon Ty3-G Gag-Pol polyprotein 0.06 OrthoFinder
lcl|VRMN01000030.1_cds_KAA8490383.1_3740 KAA8490383 Retrovirus-related Pol polyprotein from transposon 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
BP GO:0015074 DNA integration IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR005162 Retrotrans_gag_dom 67 160
IPR001878 Znf_CCHC 231 247
IPR041373 RT_RNaseH 805 904
IPR001584 Integrase_cat-core 1064 1173
IPR000477 RT_dom 553 711
IPR041588 Integrase_H2C2 985 1043
No external refs found!