lcl|VRMN01000001.1_cds_KAA8498456.1_7409 (KAA8498456)

Aliases : KAA8498456

Description : Retrovirus-related Pol polyprotein from transposon 17.6

Gene families : OG_01_0003588 (OrthoFinder) Phylogenetic Tree(s): OG0003588_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: lcl\|VRMN01000001.1_cds_KAA8498456.1_7409
Cluster	HCCA: Cluster_73

Target	Alias	Description	ECC score	Gene Family Method
lcl\|VRMN01000001.1_cds_KAA8497591.1_6544	KAA8497591	Transposon Ty3-I Gag-Pol polyprotein	0.08	OrthoFinder
lcl\|VRMN01000001.1_cds_KAA8499554.1_8507	KAA8499554	Transposon Ty3-I Gag-Pol polyprotein	0.08	OrthoFinder
lcl\|VRMN01000002.1_cds_KAA8496915.1_644	KAA8496915	Hypothetical protein	0.05	OrthoFinder
lcl\|VRMN01000006.1_cds_KAA8493480.1_4242	KAA8493480	Transposon Ty3-I Gag-Pol polyprotein	0.08	OrthoFinder
lcl\|VRMN01000006.1_cds_KAA8493648.1_4410	KAA8493648	Hypothetical protein	0.18	OrthoFinder
lcl\|VRMN01000006.1_cds_KAA8493656.1_4418	KAA8493656	Transposon Ty3-I Gag-Pol polyprotein	0.08	OrthoFinder
lcl\|VRMN01000011.1_cds_KAA8491986.1_4994	KAA8491986	Transposon Ty3-I Gag-Pol polyprotein	0.08	OrthoFinder
lcl\|VRMN01000017.1_cds_KAA8491006.1_6209	KAA8491006	Transposon Ty3-I Gag-Pol polyprotein	0.15	OrthoFinder
lcl\|VRMN01000021.1_cds_KAA8490611.1_5710	KAA8490611	Transposon Ty3-I Gag-Pol polyprotein	0.13	OrthoFinder
lcl\|VRMN01000025.1_cds_KAA8490489.1_2851	KAA8490489	Transposon Ty3-I Gag-Pol polyprotein	0.08	OrthoFinder
lcl\|VRMN01000026.1_cds_KAA8490462.1_6408	KAA8490462	Transposon Ty3-I Gag-Pol polyprotein	0.15	OrthoFinder
lcl\|VRMN01000030.1_cds_KAA8490381.1_3738	KAA8490381	Transposon Ty3-I Gag-Pol polyprotein	0.08	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0008270	zinc ion binding	IEA	Interproscan
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR001878	Znf_CCHC	375	390
IPR000477	RT_dom	710	870

External Links

No external refs found!