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  5. lcl|VRMN01000001.1_cds_KAA8498324.1_7277

lcl|VRMN01000001.1_cds_KAA8498324.1_7277 (KAA8498324)


Aliases : KAA8498324

Description : 40S ribosomal protein S21


Gene families : OG_01_0003705 (OrthoFinder) Phylogenetic Tree(s): OG0003705_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|VRMN01000001.1_cds_KAA8498324.1_7277
Cluster HCCA: Cluster_9

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00020780.14 tig00020780_g13766.t1 Protein biosynthesis.cytosolic ribosome.small subunit... 0.08 OrthoFinder
Cre03.g203450 30787782, RPS21 Protein biosynthesis.cytosolic ribosome.small subunit... 0.25 OrthoFinder
Dusal.0001s00040.1 33198798 Ribosomal protein S21e [Interproscan]. 0.18 OrthoFinder
EOD12033 No alias Ribosomal protein S21e [Interproscan]. 0.12 OrthoFinder
OT_16G01860.1 No alias Ribosomal protein S21e [Interproscan]. 0.15 OrthoFinder
PTI_25G00250.1 No alias Ribosomal protein S21e [Interproscan]. 0.27 OrthoFinder
Sro6_g004850.1 Contig175.g1990 40S ribosomal protein S21 0.28 OrthoFinder
SymbC1.scaffold4516.5 4516.5 Ribosomal protein S21e [Interproscan]. 0.03 OrthoFinder
TP04G05880.1 No alias Ribosomal protein S21e [Interproscan]. 0.18 OrthoFinder
Vocar.0011s0134.1 32895267 Ribosomal protein S21e [Interproscan]. 0.06 OrthoFinder
XM_002506478.1 MICPUN_109558, 109558 Ribosomal protein S21e [Interproscan]. 0.18 OrthoFinder
XM_003063433.1 MicpuC2_45937, 45937 Ribosomal protein S21e [Interproscan]. 0.12 OrthoFinder
lcl|LHPG02000002.1_cds_PRW60607.1_4698 PRW60607 40S ribosomal S21-2 0.21 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000213 tRNA-intron endonuclease activity IEP Enrichment
BP GO:0000394 RNA splicing, via endonucleolytic cleavage and ligation IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0004549 tRNA-specific ribonuclease activity IEP Enrichment
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Enrichment
MF GO:0004827 proline-tRNA ligase activity IEP Enrichment
CC GO:0005741 mitochondrial outer membrane IEP Enrichment
BP GO:0006388 tRNA splicing, via endonucleolytic cleavage and ligation IEP Enrichment
BP GO:0006399 tRNA metabolic process IEP Enrichment
BP GO:0006418 tRNA aminoacylation for protein translation IEP Enrichment
BP GO:0006433 prolyl-tRNA aminoacylation IEP Enrichment
MF GO:0008097 5S rRNA binding IEP Enrichment
BP GO:0008380 RNA splicing IEP Enrichment
CC GO:0015934 large ribosomal subunit IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Enrichment
MF GO:0016892 endoribonuclease activity, producing 3'-phosphomonoesters IEP Enrichment
MF GO:0016894 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 3'-phosphomonoesters IEP Enrichment
MF GO:0019843 rRNA binding IEP Enrichment
CC GO:0019867 outer membrane IEP Enrichment
CC GO:0031966 mitochondrial membrane IEP Enrichment
CC GO:0031968 organelle outer membrane IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
BP GO:0043038 amino acid activation IEP Enrichment
BP GO:0043039 tRNA aminoacylation IEP Enrichment
CC GO:0044391 ribosomal subunit IEP Enrichment
CC GO:0098588 bounding membrane of organelle IEP Enrichment
MF GO:0140098 catalytic activity, acting on RNA IEP Enrichment
MF GO:0140101 catalytic activity, acting on a tRNA IEP Enrichment
InterPro domains Description Start Stop
IPR001931 Ribosomal_S21e 1 79
No external refs found!