lcl|VRMN01000001.1_cds_KAA8498187.1_7140 (KAA8498187)

Aliases : KAA8498187

Description : Retrotransposon gag domain; Zinc finger, CCHC-type [Interproscan].

Gene families : OG_01_0003607 (OrthoFinder) Phylogenetic Tree(s): OG0003607_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: lcl\|VRMN01000001.1_cds_KAA8498187.1_7140

Target	Alias	Description	ECC score	Gene Family Method
lcl\|VRMN01000001.1_cds_KAA8498188.1_7141	KAA8498188	Copia protein	0.02	OrthoFinder
lcl\|VRMN01000006.1_cds_KAA8493471.1_4233	KAA8493471	Retrovirus-related Pol polyprotein from transposon TNT 1-94	0.07	OrthoFinder
lcl\|VRMN01000014.1_cds_KAA8491336.1_2337	KAA8491336	Copia protein	0.02	OrthoFinder
lcl\|VRMN01000014.1_cds_KAA8491362.1_2363	KAA8491362	Copia protein	0.01	OrthoFinder
lcl\|VRMN01000014.1_cds_KAA8491363.1_2364	KAA8491363	Retrotransposon gag domain [Interproscan].	0.01	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0008270	zinc ion binding	IEA	Interproscan
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR001878	Znf_CCHC	220	235
IPR005162	Retrotrans_gag_dom	67	152

External Links

No external refs found!