lcl|VRMN01000001.1_cds_KAA8498185.1_7138 (KAA8498185)


Aliases : KAA8498185

Description : Retrovirus-related Pol polyprotein from transposon TNT 1-94


Gene families : OG_01_0002899 (OrthoFinder) Phylogenetic Tree(s): OG0002899_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|VRMN01000001.1_cds_KAA8498185.1_7138
Cluster HCCA: Cluster_53

Target Alias Description ECC score Gene Family Method Actions
lcl|VRMN01000001.1_cds_KAA8497539.1_6492 KAA8497539 Hypothetical protein 0.04 OrthoFinder
lcl|VRMN01000002.1_cds_KAA8496440.1_169 KAA8496440 Hypothetical protein 0.08 OrthoFinder
lcl|VRMN01000002.1_cds_KAA8496441.1_170 KAA8496441 Hypothetical protein 0.05 OrthoFinder
lcl|VRMN01000004.1_cds_KAA8494667.1_3197 KAA8494667 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.03 OrthoFinder
lcl|VRMN01000007.1_cds_KAA8493145.1_9446 KAA8493145 Hypothetical protein 0.03 OrthoFinder
lcl|VRMN01000007.1_cds_KAA8493295.1_9596 KAA8493295 Hypothetical protein 0.12 OrthoFinder

Type GO Term Name Evidence Source
BP GO:0015074 DNA integration IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0004806 triglyceride lipase activity IEP Enrichment
MF GO:0005319 lipid transporter activity IEP Enrichment
BP GO:0006869 lipid transport IEP Enrichment
BP GO:0009092 homoserine metabolic process IEP Enrichment
MF GO:0016298 lipase activity IEP Enrichment
MF GO:0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor IEP Enrichment
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP Enrichment
BP GO:0019346 transsulfuration IEP Enrichment
MF GO:0019842 vitamin binding IEP Enrichment
MF GO:0030170 pyridoxal phosphate binding IEP Enrichment
MF GO:0050660 flavin adenine dinucleotide binding IEP Enrichment
BP GO:0050667 homocysteine metabolic process IEP Enrichment
BP GO:0061024 membrane organization IEP Enrichment
MF GO:0070279 vitamin B6 binding IEP Enrichment
BP GO:0120009 intermembrane lipid transfer IEP Enrichment
MF GO:0120013 lipid transfer activity IEP Enrichment
InterPro domains Description Start Stop
IPR013103 RVT_2 953 1128
IPR001584 Integrase_cat-core 655 761
No external refs found!