lcl|VRMN01000001.1_cds_KAA8498184.1_7137 (KAA8498184)

Aliases : KAA8498184

Description : Transposon Ty3-I Gag-Pol polyprotein

Gene families : OG_01_0000071 (OrthoFinder) Phylogenetic Tree(s): OG0000071_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: lcl\|VRMN01000001.1_cds_KAA8498184.1_7137
Cluster	HCCA: Cluster_17

Target	Alias	Description	ECC score	Gene Family Method
lcl\|VRMN01000001.1_cds_KAA8497479.1_6432	KAA8497479	Transposon Ty3-G Gag-Pol polyprotein	0.25	OrthoFinder
lcl\|VRMN01000001.1_cds_KAA8498457.1_7410	KAA8498457	Transposon Ty3-I Gag-Pol polyprotein	0.18	OrthoFinder
lcl\|VRMN01000001.1_cds_KAA8498879.1_7832	KAA8498879	Transposon Ty3-I Gag-Pol polyprotein	0.06	OrthoFinder
lcl\|VRMN01000001.1_cds_KAA8499405.1_8358	KAA8499405	Retrotransposon-derived protein PEG10	0.12	OrthoFinder
lcl\|VRMN01000001.1_cds_KAA8499550.1_8503	KAA8499550	Retrovirus-related Pol polyprotein from transposon	0.05	OrthoFinder
lcl\|VRMN01000001.1_cds_KAA8499909.1_8862	KAA8499909	Transposon Ty3-I Gag-Pol polyprotein	0.03	OrthoFinder
lcl\|VRMN01000002.1_cds_KAA8497383.1_1112	KAA8497383	Transposon Ty3-I Gag-Pol polyprotein	0.33	OrthoFinder
lcl\|VRMN01000003.1_cds_KAA8495213.1_1211	KAA8495213	Transposon Ty3-I Gag-Pol polyprotein	0.01	OrthoFinder
lcl\|VRMN01000003.1_cds_KAA8495319.1_1317	KAA8495319	Transposon Ty3-I Gag-Pol polyprotein	0.07	OrthoFinder
lcl\|VRMN01000004.1_cds_KAA8494624.1_3154	KAA8494624	Transposon Ty3-I Gag-Pol polyprotein	0.03	OrthoFinder
lcl\|VRMN01000004.1_cds_KAA8494765.1_3295	KAA8494765	Transposon Ty3-I Gag-Pol polyprotein	0.04	OrthoFinder
lcl\|VRMN01000006.1_cds_KAA8493487.1_4249	KAA8493487	Transposon Ty3-I Gag-Pol polyprotein	0.09	OrthoFinder
lcl\|VRMN01000006.1_cds_KAA8493809.1_4571	KAA8493809	Transposon Ty3-I Gag-Pol polyprotein	0.02	OrthoFinder
lcl\|VRMN01000007.1_cds_KAA8493298.1_9599	KAA8493298	Transposon Ty3-I Gag-Pol polyprotein	0.02	OrthoFinder
lcl\|VRMN01000007.1_cds_KAA8493461.1_9762	KAA8493461	Transposon Ty3-I Gag-Pol polyprotein	0.07	OrthoFinder
lcl\|VRMN01000008.1_cds_KAA8493085.1_2821	KAA8493085	Transposon Ty3-I Gag-Pol polyprotein	0.22	OrthoFinder
lcl\|VRMN01000009.1_cds_KAA8492702.1_9395	KAA8492702	Transposon Ty3-I Gag-Pol polyprotein	0.05	OrthoFinder
lcl\|VRMN01000012.1_cds_KAA8491590.1_5058	KAA8491590	Transposon Ty3-I Gag-Pol polyprotein	0.07	OrthoFinder
lcl\|VRMN01000014.1_cds_KAA8491407.1_2408	KAA8491407	Transposon Ty3-I Gag-Pol polyprotein	0.12	OrthoFinder
lcl\|VRMN01000018.1_cds_KAA8490791.1_5563	KAA8490791	Transposon Ty3-G Gag-Pol polyprotein	0.15	OrthoFinder
lcl\|VRMN01000021.1_cds_KAA8490612.1_5711	KAA8490612	Transposon Ty3-I Gag-Pol polyprotein	0.07	OrthoFinder
lcl\|VRMN01000022.1_cds_KAA8490584.1_6057	KAA8490584	Transposon Ty3-I Gag-Pol polyprotein	0.2	OrthoFinder
lcl\|VRMN01000026.1_cds_KAA8490464.1_6410	KAA8490464	Transposon Ty3-I Gag-Pol polyprotein	0.08	OrthoFinder
lcl\|VRMN01000026.1_cds_KAA8490466.1_6412	KAA8490466	Transposon Ty3-I Gag-Pol polyprotein	0.07	OrthoFinder
lcl\|VRMN01000028.1_cds_KAA8490418.1_5041	KAA8490418	Transposon Ty3-G Gag-Pol polyprotein	0.08	OrthoFinder
lcl\|VRMN01000030.1_cds_KAA8490383.1_3740	KAA8490383	Retrovirus-related Pol polyprotein from transposon	0.02	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008270	zinc ion binding	IEA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015074	DNA integration	IEA	Interproscan
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0006310	DNA recombination	IEP	Enrichment
BP	GO:0006313	transposition, DNA-mediated	IEP	Enrichment
BP	GO:0032196	transposition	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR001878	Znf_CCHC	231	247
IPR005162	Retrotrans_gag_dom	67	160
IPR001584	Integrase_cat-core	1053	1167
IPR000477	RT_dom	547	705
IPR041588	Integrase_H2C2	979	1037
IPR041373	RT_RNaseH	799	898

External Links

No external refs found!

lcl|VRMN01000001.1_cds_KAA8498184.1_7137 (KAA8498184)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation