lcl|VRMN01000001.1_cds_KAA8498184.1_7137 (KAA8498184)


Aliases : KAA8498184

Description : Transposon Ty3-I Gag-Pol polyprotein


Gene families : OG_01_0000071 (OrthoFinder) Phylogenetic Tree(s): OG0000071_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|VRMN01000001.1_cds_KAA8498184.1_7137
Cluster HCCA: Cluster_17

Target Alias Description ECC score Gene Family Method Actions
lcl|VRMN01000001.1_cds_KAA8497479.1_6432 KAA8497479 Transposon Ty3-G Gag-Pol polyprotein 0.25 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8498457.1_7410 KAA8498457 Transposon Ty3-I Gag-Pol polyprotein 0.18 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8498879.1_7832 KAA8498879 Transposon Ty3-I Gag-Pol polyprotein 0.06 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8499405.1_8358 KAA8499405 Retrotransposon-derived protein PEG10 0.12 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8499550.1_8503 KAA8499550 Retrovirus-related Pol polyprotein from transposon 0.05 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8499909.1_8862 KAA8499909 Transposon Ty3-I Gag-Pol polyprotein 0.03 OrthoFinder
lcl|VRMN01000002.1_cds_KAA8497383.1_1112 KAA8497383 Transposon Ty3-I Gag-Pol polyprotein 0.33 OrthoFinder
lcl|VRMN01000003.1_cds_KAA8495213.1_1211 KAA8495213 Transposon Ty3-I Gag-Pol polyprotein 0.01 OrthoFinder
lcl|VRMN01000003.1_cds_KAA8495319.1_1317 KAA8495319 Transposon Ty3-I Gag-Pol polyprotein 0.07 OrthoFinder
lcl|VRMN01000004.1_cds_KAA8494624.1_3154 KAA8494624 Transposon Ty3-I Gag-Pol polyprotein 0.03 OrthoFinder
lcl|VRMN01000004.1_cds_KAA8494765.1_3295 KAA8494765 Transposon Ty3-I Gag-Pol polyprotein 0.04 OrthoFinder
lcl|VRMN01000006.1_cds_KAA8493487.1_4249 KAA8493487 Transposon Ty3-I Gag-Pol polyprotein 0.09 OrthoFinder
lcl|VRMN01000006.1_cds_KAA8493809.1_4571 KAA8493809 Transposon Ty3-I Gag-Pol polyprotein 0.02 OrthoFinder
lcl|VRMN01000007.1_cds_KAA8493298.1_9599 KAA8493298 Transposon Ty3-I Gag-Pol polyprotein 0.02 OrthoFinder
lcl|VRMN01000007.1_cds_KAA8493461.1_9762 KAA8493461 Transposon Ty3-I Gag-Pol polyprotein 0.07 OrthoFinder
lcl|VRMN01000008.1_cds_KAA8493085.1_2821 KAA8493085 Transposon Ty3-I Gag-Pol polyprotein 0.22 OrthoFinder
lcl|VRMN01000009.1_cds_KAA8492702.1_9395 KAA8492702 Transposon Ty3-I Gag-Pol polyprotein 0.05 OrthoFinder
lcl|VRMN01000012.1_cds_KAA8491590.1_5058 KAA8491590 Transposon Ty3-I Gag-Pol polyprotein 0.07 OrthoFinder
lcl|VRMN01000014.1_cds_KAA8491407.1_2408 KAA8491407 Transposon Ty3-I Gag-Pol polyprotein 0.12 OrthoFinder
lcl|VRMN01000018.1_cds_KAA8490791.1_5563 KAA8490791 Transposon Ty3-G Gag-Pol polyprotein 0.15 OrthoFinder
lcl|VRMN01000021.1_cds_KAA8490612.1_5711 KAA8490612 Transposon Ty3-I Gag-Pol polyprotein 0.07 OrthoFinder
lcl|VRMN01000022.1_cds_KAA8490584.1_6057 KAA8490584 Transposon Ty3-I Gag-Pol polyprotein 0.2 OrthoFinder
lcl|VRMN01000026.1_cds_KAA8490464.1_6410 KAA8490464 Transposon Ty3-I Gag-Pol polyprotein 0.08 OrthoFinder
lcl|VRMN01000026.1_cds_KAA8490466.1_6412 KAA8490466 Transposon Ty3-I Gag-Pol polyprotein 0.07 OrthoFinder
lcl|VRMN01000028.1_cds_KAA8490418.1_5041 KAA8490418 Transposon Ty3-G Gag-Pol polyprotein 0.08 OrthoFinder
lcl|VRMN01000030.1_cds_KAA8490383.1_3740 KAA8490383 Retrovirus-related Pol polyprotein from transposon 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
BP GO:0015074 DNA integration IEA Interproscan
Type GO Term Name Evidence Source
BP GO:0006310 DNA recombination IEP Enrichment
BP GO:0006313 transposition, DNA-mediated IEP Enrichment
BP GO:0032196 transposition IEP Enrichment
InterPro domains Description Start Stop
IPR001878 Znf_CCHC 231 247
IPR005162 Retrotrans_gag_dom 67 160
IPR001584 Integrase_cat-core 1053 1167
IPR000477 RT_dom 547 705
IPR041588 Integrase_H2C2 979 1037
IPR041373 RT_RNaseH 799 898
No external refs found!