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  5. lcl|VRMN01000001.1_cds_KAA8498172.1_7125

lcl|VRMN01000001.1_cds_KAA8498172.1_7125 (KAA8498172)


Aliases : KAA8498172

Description : Transposon Ty3-G Gag-Pol polyprotein


Gene families : OG_01_0000060 (OrthoFinder) Phylogenetic Tree(s): OG0000060_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Type Description Actions
Neighborhood HRR: lcl|VRMN01000001.1_cds_KAA8498172.1_7125

Target Alias Description ECC score Gene Family Method Actions
Cz02g03020.t1 No alias Reverse transcriptase/retrotransposon-derived protein,... 0.03 OrthoFinder
Cz02g27010.t1 No alias Reverse transcriptase/retrotransposon-derived protein,... 0.02 OrthoFinder
Cz02g41150.t1 No alias Reverse transcriptase/retrotransposon-derived protein,... 0.02 OrthoFinder
Cz03g14150.t1 No alias Integrase zinc-binding domain; Integrase, catalytic... 0.02 OrthoFinder
Cz03g40130.t1 No alias Reverse transcriptase/retrotransposon-derived protein,... 0.04 OrthoFinder
Cz04g31300.t1 No alias Chromo domain [Interproscan]. 0.02 OrthoFinder
Cz05g14160.t1 No alias Retroviral aspartyl protease; Retrotransposon gag... 0.04 OrthoFinder
Cz06g10270.t1 No alias Reverse transcriptase/retrotransposon-derived protein,... 0.03 OrthoFinder
Cz06g11150.t1 No alias Reverse transcriptase, RNase H-like domain; Integrase... 0.03 OrthoFinder
Cz06g22260.t1 No alias Hypothetical protein 0.02 OrthoFinder
Cz07g15230.t1 No alias Chromo domain [Interproscan]. 0.02 OrthoFinder
Cz09g23090.t1 No alias Integrase zinc-binding domain; Integrase, catalytic... 0.02 OrthoFinder
Cz09g23160.t1 No alias Integrase zinc-binding domain; Integrase, catalytic... 0.02 OrthoFinder
Cz11g01040.t1 No alias Reverse transcriptase/retrotransposon-derived protein,... 0.04 OrthoFinder
Cz13g09240.t1 No alias Retroviral aspartyl protease [Interproscan]. 0.02 OrthoFinder
Cz15g18080.t1 No alias Chromo domain [Interproscan]. 0.02 OrthoFinder
Cz19g08090.t1 No alias Integrase, catalytic core; Reverse transcriptase domain;... 0.02 OrthoFinder
lcl|BLLF01001218.1_cds_GFH17889.1_12366 HaLaN_14611, GFH17889 Reverse transcriptase, RNase H-like domain; Reverse... 0.02 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8497473.1_6426 KAA8497473 Transposon Ty3-I Gag-Pol polyprotein 0.08 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8499396.1_8349 KAA8499396 Transposon Ty3-G Gag-Pol polyprotein 0.06 OrthoFinder
lcl|VRMN01000002.1_cds_KAA8496807.1_536 KAA8496807 Transposon Ty3-I Gag-Pol polyprotein 0.11 OrthoFinder
lcl|VRMN01000002.1_cds_KAA8497381.1_1110 KAA8497381 Transposon Ty3-I Gag-Pol polyprotein 0.13 OrthoFinder
lcl|VRMN01000003.1_cds_KAA8495215.1_1213 KAA8495215 Transposon Ty3-I Gag-Pol polyprotein 0.04 OrthoFinder
lcl|VRMN01000003.1_cds_KAA8495847.1_1845 KAA8495847 Transposon Ty3-G Gag-Pol polyprotein 0.06 OrthoFinder
lcl|VRMN01000003.1_cds_KAA8496244.1_2242 KAA8496244 Transposon Ty3-I Gag-Pol polyprotein 0.06 OrthoFinder
lcl|VRMN01000004.1_cds_KAA8494421.1_2951 KAA8494421 Transposon Ty3-I Gag-Pol polyprotein 0.04 OrthoFinder
lcl|VRMN01000004.1_cds_KAA8494422.1_2952 KAA8494422 Transposon Ty3-I Gag-Pol polyprotein 0.02 OrthoFinder
lcl|VRMN01000004.1_cds_KAA8494620.1_3150 KAA8494620 Transposon Ty3-I Gag-Pol polyprotein 0.11 OrthoFinder
lcl|VRMN01000004.1_cds_KAA8494622.1_3152 KAA8494622 Transposon Ty3-I Gag-Pol polyprotein 0.1 OrthoFinder
lcl|VRMN01000004.1_cds_KAA8494668.1_3198 KAA8494668 Transposon Ty3-I Gag-Pol polyprotein 0.04 OrthoFinder
lcl|VRMN01000004.1_cds_KAA8495183.1_3713 KAA8495183 Transposon Ty3-I Gag-Pol polyprotein 0.08 OrthoFinder
lcl|VRMN01000005.1_cds_KAA8494005.1_3869 KAA8494005 Transposon Ty3-I Gag-Pol polyprotein 0.06 OrthoFinder
lcl|VRMN01000009.1_cds_KAA8492704.1_9397 KAA8492704 Transposon Ty3-I Gag-Pol polyprotein 0.04 OrthoFinder
lcl|VRMN01000012.1_cds_KAA8491607.1_5075 KAA8491607 Transposon Ty3-I Gag-Pol polyprotein 0.04 OrthoFinder
lcl|VRMN01000014.1_cds_KAA8491326.1_2327 KAA8491326 Transposon Ty3-I Gag-Pol polyprotein 0.12 OrthoFinder
lcl|VRMN01000015.1_cds_KAA8491220.1_5848 KAA8491220 Hypothetical protein 0.06 OrthoFinder
lcl|VRMN01000016.1_cds_KAA8491010.1_9767 KAA8491010 Hypothetical protein 0.07 OrthoFinder
lcl|VRMN01000018.1_cds_KAA8490790.1_5562 KAA8490790 Transposon Ty3-I Gag-Pol polyprotein 0.09 OrthoFinder
lcl|VRMN01000019.1_cds_KAA8490785.1_6041 KAA8490785 Transposon Ty3-G Gag-Pol polyprotein 0.06 OrthoFinder
lcl|VRMN01000023.1_cds_KAA8490537.1_5903 KAA8490537 Transposon Ty3-G Gag-Pol polyprotein 0.06 OrthoFinder
lcl|VRMN01000023.1_cds_KAA8490538.1_5904 KAA8490538 Transposon Ty3-I Gag-Pol polyprotein 0.09 OrthoFinder
lcl|VRMN01000026.1_cds_KAA8490463.1_6409 KAA8490463 Transposon Ty3-G Gag-Pol polyprotein 0.11 OrthoFinder
lcl|VRMN01000041.1_cds_KAA8490242.1_5206 KAA8490242 Transposon Ty3-I Gag-Pol polyprotein 0.11 OrthoFinder

Type GO Term Name Evidence Source
BP GO:0015074 DNA integration IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0008270 zinc ion binding IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043169 cation binding IEP Enrichment
MF GO:0046872 metal ion binding IEP Enrichment
MF GO:0046914 transition metal ion binding IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
InterPro domains Description Start Stop
IPR001584 Integrase_cat-core 845 957
IPR041373 RT_RNaseH 551 655
IPR041588 Integrase_H2C2 769 828
IPR000477 RT_dom 320 455
No external refs found!