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  5. lcl|VRMN01000001.1_cds_KAA8498053.1_7006

lcl|VRMN01000001.1_cds_KAA8498053.1_7006 (KAA8498053)


Aliases : KAA8498053

Description : DEAD-box ATP-dependent RNA helicase 5


Gene families : OG_01_0000110 (OrthoFinder) Phylogenetic Tree(s): OG0000110_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|VRMN01000001.1_cds_KAA8498053.1_7006
Cluster HCCA: Cluster_26

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00001049.35 tig00001049_g6681.t1 DEAD-box ATP-dependent RNA helicase 20 OS=Oryza sativa... 0.03 OrthoFinder
Cre01.g021600 30789366 DEAD-box ATP-dependent RNA helicase 14 OS=Arabidopsis thaliana 0.03 OrthoFinder
Cre12.g539100 30792646 DEAD-box ATP-dependent RNA helicase 5 OS=Oryza sativa... 0.04 OrthoFinder
Cre12.g540200 30792196 DEAD-box ATP-dependent RNA helicase 20 OS=Oryza sativa... 0.07 OrthoFinder
Cz05g19260.t1 No alias Helicase, C-terminal; WW domain; DEAD/DEAH box helicase... 0.03 OrthoFinder
Cz05g24090.t1 No alias Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.02 OrthoFinder
Cz07g14080.t1 No alias Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.04 OrthoFinder
Cz11g20100.t1 No alias Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.04 OrthoFinder
Dusal.0077s00030.1 33192455 Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.04 OrthoFinder
Dusal.0466s00003.1 33194842 DEAD/DEAH box helicase domain [Interproscan]. 0.02 OrthoFinder
EOD29280 No alias Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.05 OrthoFinder
EOD38751 No alias Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.04 OrthoFinder
OT_07G01830.1 No alias Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.02 OrthoFinder
OT_10G00150.1 No alias Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.05 OrthoFinder
OT_12G00350.1 No alias Helicase, C-terminal; DEAD/DEAH box helicase domain; WW... 0.03 OrthoFinder
OT_17G02300.1 No alias Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.08 OrthoFinder
PTI_00G03690.1 No alias Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.08 OrthoFinder
PTI_01G10140.1 No alias Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.02 OrthoFinder
PTI_04G04860.1 No alias Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.08 OrthoFinder
Sro1046_g235060.1 Contig1884.g16427 Dependent RNA helicase 0.08 OrthoFinder
Sro1103_g241740.1 Contig4430.g33251 Dependent RNA helicase 0.03 OrthoFinder
Sro3572_g349270.1 Contig4413.g33150 RNA helicase DBP2 0.03 OrthoFinder
SymbC1.scaffold406.3 406.3 DEAD/DEAH box helicase domain; Helicase, C-terminal... 0.02 OrthoFinder
TP01G06480.1 No alias Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.02 OrthoFinder
TP03G06040.1 No alias Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.05 OrthoFinder
Transcript_contig_56606 56606 Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.03 OrthoFinder
Transcript_contig_56629 56629 Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.02 OrthoFinder
Vocar.0007s0049.1 32888024 DEAD/DEAH box helicase domain; Helicase, C-terminal... 0.02 OrthoFinder
XM_002499634.1 MICPUN_67469, 67469 Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.07 OrthoFinder
XM_002502614.1 MICPUN_58886, 58886 DEAD/DEAH box helicase 0.06 OrthoFinder
XM_002504616.1 MICPUN_97883, 97883 Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.08 OrthoFinder
XM_002506543.1 MICPUN_98380, 98380 Dead-box ATP-dependent RNA helicase 0.02 OrthoFinder
XM_003063159.1 MicpuC2_45923, 45923 Dead-box ATP-dependent RNA helicase 0.02 OrthoFinder
XM_003063731.1 MicpuC2_22564, 22564 Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.03 OrthoFinder
XM_003064188.1 MicpuC2_46013, 46013 Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.03 OrthoFinder
XM_003064706.1 MicpuC2_45119, 45119 Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.05 OrthoFinder
lcl|BLLF01000115.1_cds_GFH07782.1_2259 HaLaN_02635, GFH07782 DEAD box RNA helicase 0.02 OrthoFinder
lcl|BLLF01001123.1_cds_GFH17278.1_11755 HaLaN_13879, GFH17278 DEAD box RNA helicase 0.04 OrthoFinder
lcl|BLLF01001123.1_cds_GFH17279.1_11756 HaLaN_13880, GFH17279 Hypothetical protein 0.02 OrthoFinder
lcl|LHPG02000004.1_cds_PRW59081.1_7009 PRW59081 DEAD-box ATP-dependent RNA helicase 20-like 0.05 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003725 double-stranded RNA binding IEP Enrichment
MF GO:0003735 structural constituent of ribosome IEP Enrichment
MF GO:0004055 argininosuccinate synthase activity IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
CC GO:0005730 nucleolus IEP Enrichment
CC GO:0005840 ribosome IEP Enrichment
BP GO:0006364 rRNA processing IEP Enrichment
BP GO:0006412 translation IEP Enrichment
BP GO:0006525 arginine metabolic process IEP Enrichment
BP GO:0006526 arginine biosynthetic process IEP Enrichment
BP GO:0006777 Mo-molybdopterin cofactor biosynthetic process IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
BP GO:0009064 glutamine family amino acid metabolic process IEP Enrichment
BP GO:0009084 glutamine family amino acid biosynthetic process IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
BP GO:0016072 rRNA metabolic process IEP Enrichment
CC GO:0019008 molybdopterin synthase complex IEP Enrichment
BP GO:0019538 protein metabolic process IEP Enrichment
BP GO:0019720 Mo-molybdopterin cofactor metabolic process IEP Enrichment
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Enrichment
CC GO:0032040 small-subunit processome IEP Enrichment
BP GO:0034645 cellular macromolecule biosynthetic process IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
BP GO:0042254 ribosome biogenesis IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043228 non-membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Enrichment
BP GO:0043545 molybdopterin cofactor metabolic process IEP Enrichment
BP GO:0044085 cellular component biogenesis IEP Enrichment
BP GO:0044267 cellular protein metabolic process IEP Enrichment
BP GO:0051189 prosthetic group metabolic process IEP Enrichment
MF GO:0051539 4 iron, 4 sulfur cluster binding IEP Enrichment
MF GO:0070008 serine-type exopeptidase activity IEP Enrichment
BP GO:0071840 cellular component organization or biogenesis IEP Enrichment
BP GO:1901564 organonitrogen compound metabolic process IEP Enrichment
BP GO:1901566 organonitrogen compound biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 175 359
IPR001650 Helicase_C 403 508
No external refs found!