lcl|VRMN01000001.1_cds_KAA8497813.1_6766 (KAA8497813)

Aliases : KAA8497813

Description : Copia protein

Gene families : OG_01_0000588 (OrthoFinder) Phylogenetic Tree(s): OG0000588_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: lcl\|VRMN01000001.1_cds_KAA8497813.1_6766
Cluster	HCCA: Cluster_59

Target	Alias	Description	ECC score	Gene Family Method
lcl\|VRMN01000002.1_cds_KAA8496290.1_19	KAA8496290	Retrovirus-related Pol polyprotein from transposon TNT 1-94	0.04	OrthoFinder
lcl\|VRMN01000002.1_cds_KAA8497464.1_1193	KAA8497464	Hypothetical protein	0.03	OrthoFinder
lcl\|VRMN01000003.1_cds_KAA8495231.1_1229	KAA8495231	Retrovirus-related Pol polyprotein from transposon TNT 1-94	0.04	OrthoFinder
lcl\|VRMN01000003.1_cds_KAA8495709.1_1707	KAA8495709	Retrovirus-related Pol polyprotein from transposon TNT 1-94	0.04	OrthoFinder
lcl\|VRMN01000003.1_cds_KAA8496246.1_2244	KAA8496246	Copia protein	0.03	OrthoFinder
lcl\|VRMN01000004.1_cds_KAA8494542.1_3072	KAA8494542	Retrovirus-related Pol polyprotein from transposon TNT 1-94	0.03	OrthoFinder
lcl\|VRMN01000011.1_cds_KAA8491889.1_4897	KAA8491889	Retrovirus-related Pol polyprotein from transposon TNT 1-94	0.05	OrthoFinder
lcl\|VRMN01000011.1_cds_KAA8491988.1_4996	KAA8491988	Retrovirus-related Pol polyprotein from transposon TNT 1-94	0.04	OrthoFinder
lcl\|VRMN01000014.1_cds_KAA8491360.1_2361	KAA8491360	Hypothetical protein	0.03	OrthoFinder

Type	GO Term	Name	Evidence	Source
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015074	DNA integration	IEA	Interproscan
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
BP	GO:0002097	tRNA wobble base modification	IEP	Enrichment
BP	GO:0002098	tRNA wobble uridine modification	IEP	Enrichment
MF	GO:0008270	zinc ion binding	IEP	Enrichment
CC	GO:0033588	elongator holoenzyme complex	IEP	Enrichment
MF	GO:0046914	transition metal ion binding	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR005162	Retrotrans_gag_dom	123	211
IPR013103	RVT_2	928	1158
IPR001584	Integrase_cat-core	524	621

External Links

No external refs found!