lcl|VRMN01000001.1_cds_KAA8497670.1_6623 (KAA8497670)

Aliases : KAA8497670

Description : Transposon Ty3-I Gag-Pol polyprotein

Gene families : OG_01_0000071 (OrthoFinder) Phylogenetic Tree(s): OG0000071_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: lcl\|VRMN01000001.1_cds_KAA8497670.1_6623

Target	Alias	Description	ECC score	Gene Family Method
lcl\|VRMN01000001.1_cds_KAA8498457.1_7410	KAA8498457	Transposon Ty3-I Gag-Pol polyprotein	0.07	OrthoFinder
lcl\|VRMN01000001.1_cds_KAA8498631.1_7584	KAA8498631	Transposon Ty3-G Gag-Pol polyprotein	0.04	OrthoFinder
lcl\|VRMN01000001.1_cds_KAA8498876.1_7829	KAA8498876	Transposon Ty3-I Gag-Pol polyprotein	0.03	OrthoFinder
lcl\|VRMN01000001.1_cds_KAA8499404.1_8357	KAA8499404	Transposon Ty3-I Gag-Pol polyprotein	0.03	OrthoFinder
lcl\|VRMN01000001.1_cds_KAA8499909.1_8862	KAA8499909	Transposon Ty3-I Gag-Pol polyprotein	0.03	OrthoFinder
lcl\|VRMN01000002.1_cds_KAA8496449.1_178	KAA8496449	Transposon Ty3-I Gag-Pol polyprotein	0.07	OrthoFinder
lcl\|VRMN01000002.1_cds_KAA8496450.1_179	KAA8496450	Retrotransposon-derived protein PEG10	0.04	OrthoFinder
lcl\|VRMN01000003.1_cds_KAA8495213.1_1211	KAA8495213	Transposon Ty3-I Gag-Pol polyprotein	0.01	OrthoFinder
lcl\|VRMN01000003.1_cds_KAA8495820.1_1818	KAA8495820	Transposon Ty3-I Gag-Pol polyprotein	0.04	OrthoFinder
lcl\|VRMN01000004.1_cds_KAA8494624.1_3154	KAA8494624	Transposon Ty3-I Gag-Pol polyprotein	0.03	OrthoFinder
lcl\|VRMN01000004.1_cds_KAA8494670.1_3200	KAA8494670	Transposon Ty3-I Gag-Pol polyprotein	0.03	OrthoFinder
lcl\|VRMN01000004.1_cds_KAA8494765.1_3295	KAA8494765	Transposon Ty3-I Gag-Pol polyprotein	0.02	OrthoFinder
lcl\|VRMN01000006.1_cds_KAA8493809.1_4571	KAA8493809	Transposon Ty3-I Gag-Pol polyprotein	0.02	OrthoFinder
lcl\|VRMN01000007.1_cds_KAA8493298.1_9599	KAA8493298	Transposon Ty3-I Gag-Pol polyprotein	0.03	OrthoFinder
lcl\|VRMN01000008.1_cds_KAA8492723.1_2459	KAA8492723	Transposon Ty3-I Gag-Pol polyprotein	0.02	OrthoFinder
lcl\|VRMN01000011.1_cds_KAA8491827.1_4835	KAA8491827	Transposon Ty3-I Gag-Pol polyprotein	0.03	OrthoFinder
lcl\|VRMN01000013.1_cds_KAA8491424.1_6234	KAA8491424	Transposon Ty3-G Gag-Pol polyprotein	0.03	OrthoFinder
lcl\|VRMN01000014.1_cds_KAA8491407.1_2408	KAA8491407	Transposon Ty3-I Gag-Pol polyprotein	0.05	OrthoFinder
lcl\|VRMN01000017.1_cds_KAA8490923.1_6126	KAA8490923	Transposon Ty3-I Gag-Pol polyprotein	0.02	OrthoFinder
lcl\|VRMN01000028.1_cds_KAA8490418.1_5041	KAA8490418	Transposon Ty3-G Gag-Pol polyprotein	0.07	OrthoFinder
lcl\|VRMN01000030.1_cds_KAA8490383.1_3740	KAA8490383	Retrovirus-related Pol polyprotein from transposon	0.04	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008270	zinc ion binding	IEA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015074	DNA integration	IEA	Interproscan
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0000079	regulation of cyclin-dependent protein serine/threonine kinase activity	IEP	Enrichment
BP	GO:0001932	regulation of protein phosphorylation	IEP	Enrichment
BP	GO:0019220	regulation of phosphate metabolic process	IEP	Enrichment
BP	GO:0019222	regulation of metabolic process	IEP	Enrichment
MF	GO:0019899	enzyme binding	IEP	Enrichment
MF	GO:0019900	kinase binding	IEP	Enrichment
MF	GO:0019901	protein kinase binding	IEP	Enrichment
BP	GO:0031323	regulation of cellular metabolic process	IEP	Enrichment
BP	GO:0031399	regulation of protein modification process	IEP	Enrichment
BP	GO:0032268	regulation of cellular protein metabolic process	IEP	Enrichment
BP	GO:0042325	regulation of phosphorylation	IEP	Enrichment
BP	GO:0043549	regulation of kinase activity	IEP	Enrichment
BP	GO:0045859	regulation of protein kinase activity	IEP	Enrichment
BP	GO:0050790	regulation of catalytic activity	IEP	Enrichment
BP	GO:0051171	regulation of nitrogen compound metabolic process	IEP	Enrichment
BP	GO:0051174	regulation of phosphorus metabolic process	IEP	Enrichment
BP	GO:0051246	regulation of protein metabolic process	IEP	Enrichment
BP	GO:0051338	regulation of transferase activity	IEP	Enrichment
BP	GO:0051726	regulation of cell cycle	IEP	Enrichment
BP	GO:0060255	regulation of macromolecule metabolic process	IEP	Enrichment
BP	GO:0065009	regulation of molecular function	IEP	Enrichment
BP	GO:0071900	regulation of protein serine/threonine kinase activity	IEP	Enrichment
BP	GO:0080090	regulation of primary metabolic process	IEP	Enrichment
BP	GO:1904029	regulation of cyclin-dependent protein kinase activity	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR041373	RT_RNaseH	799	898
IPR001878	Znf_CCHC	231	247
IPR000477	RT_dom	547	705
IPR001584	Integrase_cat-core	1058	1167
IPR041588	Integrase_H2C2	979	1037
IPR005162	Retrotrans_gag_dom	67	160

External Links

No external refs found!

lcl|VRMN01000001.1_cds_KAA8497670.1_6623 (KAA8497670)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation