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  5. lcl|VRMN01000001.1_cds_KAA8497669.1_6622

lcl|VRMN01000001.1_cds_KAA8497669.1_6622 (KAA8497669)


Aliases : KAA8497669

Description : Integrase, catalytic core; gag-polyprotein putative aspartyl protease; Retrotransposon gag domain; Reverse transcriptase, RNA-dependent DNA polymerase [Interproscan].


Gene families : OG_01_0002023 (OrthoFinder) Phylogenetic Tree(s): OG0002023_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|VRMN01000001.1_cds_KAA8497669.1_6622

Target Alias Description ECC score Gene Family Method Actions
lcl|VRMN01000004.1_cds_KAA8494875.1_3405 KAA8494875 Hypothetical protein 0.03 OrthoFinder
lcl|VRMN01000004.1_cds_KAA8494877.1_3407 KAA8494877 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.02 OrthoFinder
lcl|VRMN01000010.1_cds_KAA8492110.1_5293 KAA8492110 Hypothetical protein 0.08 OrthoFinder

Type GO Term Name Evidence Source
BP GO:0015074 DNA integration IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR001584 Integrase_cat-core 656 757
IPR013103 RVT_2 1034 1248
IPR005162 Retrotrans_gag_dom 42 116
No external refs found!