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  5. lcl|VRMN01000001.1_cds_KAA8497668.1_6621

lcl|VRMN01000001.1_cds_KAA8497668.1_6621 (KAA8497668)


Aliases : KAA8497668

Description : Transcription initiation factor TFIID subunit 1


Gene families : OG_01_0003440 (OrthoFinder) Phylogenetic Tree(s): OG0003440_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|VRMN01000001.1_cds_KAA8497668.1_6621
Cluster HCCA: Cluster_95

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00020903.20 tig00020903_g15088.t1 RNA biosynthesis.RNA polymerase II-dependent... 0.03 OrthoFinder
Cre10.g425501 30790106 Transcription initiation factor TFIID subunit 1 OS=Oryza... 0.03 OrthoFinder
Cz01g22250.t1 No alias Zinc finger, CW-type; Transcription initiation factor... 0.04 OrthoFinder
Dusal.0232s00002.1 33201486 Transcription initiation factor TFIID subunit 1, domain... 0.02 OrthoFinder
EOD14533 No alias Transcription initiation factor TFIID subunit 1, domain... 0.04 OrthoFinder
OT_09G04420.1 No alias Transcription initiation factor TFIID subunit 1, domain... 0.03 OrthoFinder
PTI_01G07410.1 No alias Transcription initiation factor TFIID subunit 1, domain... 0.03 OrthoFinder
XM_003060471.1 MicpuC2_41115, 41115 Transcription initiation factor TFIID subunit 1, domain... 0.03 OrthoFinder
lcl|BLLF01000450.1_cds_GFH11937.1_6414 HaLaN_07531, GFH11937 Hypothetical protein 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000123 histone acetyltransferase complex IEP Enrichment
MF GO:0000166 nucleotide binding IEP Enrichment
MF GO:0003677 DNA binding IEP Enrichment
MF GO:0003887 DNA-directed DNA polymerase activity IEP Enrichment
MF GO:0003909 DNA ligase activity IEP Enrichment
MF GO:0003911 DNA ligase (NAD+) activity IEP Enrichment
MF GO:0004518 nuclease activity IEP Enrichment
MF GO:0004527 exonuclease activity IEP Enrichment
MF GO:0004842 ubiquitin-protein transferase activity IEP Enrichment
MF GO:0005543 phospholipid binding IEP Enrichment
CC GO:0005669 transcription factor TFIID complex IEP Enrichment
BP GO:0006260 DNA replication IEP Enrichment
BP GO:0006281 DNA repair IEP Enrichment
BP GO:0006325 chromatin organization IEP Enrichment
BP GO:0006354 DNA-templated transcription, elongation IEP Enrichment
BP GO:0006368 transcription elongation from RNA polymerase II promoter IEP Enrichment
BP GO:0006464 cellular protein modification process IEP Enrichment
BP GO:0006476 protein deacetylation IEP Enrichment
BP GO:0006950 response to stress IEP Enrichment
BP GO:0006974 cellular response to DNA damage stimulus IEP Enrichment
CC GO:0008023 transcription elongation factor complex IEP Enrichment
MF GO:0008170 N-methyltransferase activity IEP Enrichment
MF GO:0008276 protein methyltransferase activity IEP Enrichment
MF GO:0008289 lipid binding IEP Enrichment
MF GO:0016278 lysine N-methyltransferase activity IEP Enrichment
MF GO:0016279 protein-lysine N-methyltransferase activity IEP Enrichment
BP GO:0016569 covalent chromatin modification IEP Enrichment
BP GO:0016570 histone modification IEP Enrichment
BP GO:0016575 histone deacetylation IEP Enrichment
CC GO:0016593 Cdc73/Paf1 complex IEP Enrichment
MF GO:0016603 glutaminyl-peptide cyclotransferase activity IEP Enrichment
MF GO:0016755 aminoacyltransferase activity IEP Enrichment
MF GO:0016788 hydrolase activity, acting on ester bonds IEP Enrichment
BP GO:0017186 peptidyl-pyroglutamic acid biosynthetic process, using glutaminyl-peptide cyclotransferase IEP Enrichment
MF GO:0018024 histone-lysine N-methyltransferase activity IEP Enrichment
BP GO:0018199 peptidyl-glutamine modification IEP Enrichment
MF GO:0019787 ubiquitin-like protein transferase activity IEP Enrichment
CC GO:0031248 protein acetyltransferase complex IEP Enrichment
BP GO:0033554 cellular response to stress IEP Enrichment
BP GO:0035601 protein deacylation IEP Enrichment
BP GO:0036211 protein modification process IEP Enrichment
MF GO:0042054 histone methyltransferase activity IEP Enrichment
MF GO:0043015 gamma-tubulin binding IEP Enrichment
BP GO:0043412 macromolecule modification IEP Enrichment
MF GO:0044877 protein-containing complex binding IEP Enrichment
BP GO:0050896 response to stimulus IEP Enrichment
BP GO:0051716 cellular response to stimulus IEP Enrichment
CC GO:0070461 SAGA-type complex IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
BP GO:0098732 macromolecule deacylation IEP Enrichment
MF GO:0140097 catalytic activity, acting on DNA IEP Enrichment
CC GO:0140513 nuclear protein-containing complex IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
CC GO:1902493 acetyltransferase complex IEP Enrichment
InterPro domains Description Start Stop
IPR022591 TFIID_sub1_DUF3591 754 987
IPR001487 Bromodomain 1880 1935
IPR009067 TAF_II_230-bd 26 55
IPR022591 TFIID_sub1_DUF3591 1077 1280
No external refs found!