1. Home
  2. Species
  3. Porphyridium purpureum
  4. Sequence
  5. lcl|VRMN01000001.1_cds_KAA8497645.1_6598

lcl|VRMN01000001.1_cds_KAA8497645.1_6598 (KAA8497645)


Aliases : KAA8497645

Description : E3 ubiquitin-protein ligase ATL9


Gene families : OG_01_0000005 (OrthoFinder) Phylogenetic Tree(s): OG0000005_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|VRMN01000001.1_cds_KAA8497645.1_6598
Cluster HCCA: Cluster_60

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000204.87 tig00000204_g17754.t1 Protein degradation.peptide tagging.Ubiquitin... 0.01 OrthoFinder
Cpa|evm.model.tig00000227.13 tig00000227_g19807.t1 No description available 0.03 OrthoFinder
Cpa|evm.model.tig00001286.17 tig00001286_g8034.t1 Protein degradation.peptide tagging.Ubiquitin... 0.02 OrthoFinder
Cre10.g442750 30790553 Protein degradation.peptide tagging.Ubiquitin... 0.02 OrthoFinder
EOD18251 No alias Zinc finger, RING-type [Interproscan]. 0.01 OrthoFinder
EOD21978 No alias Zinc finger, RING-type [Interproscan]. 0.01 OrthoFinder
Sro1325_g262870.1 Contig1058.g10378 Zinc finger, C3HC4 type (RING finger) 0.05 OrthoFinder
SymbC1.scaffold2144.10 2144.10 Zinc finger, RING-type [Interproscan]. 0.03 OrthoFinder
Transcript_contig_57423 57423 Zinc finger, RING-type [Interproscan]. 0.01 OrthoFinder
XM_002507807.1 MICPUN_60573, 60573 Zinc finger, RING-type [Interproscan]. 0.02 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP Enrichment
MF GO:0003779 actin binding IEP Enrichment
MF GO:0003964 RNA-directed DNA polymerase activity IEP Enrichment
MF GO:0005509 calcium ion binding IEP Enrichment
BP GO:0006325 chromatin organization IEP Enrichment
BP GO:0006334 nucleosome assembly IEP Enrichment
BP GO:0007010 cytoskeleton organization IEP Enrichment
MF GO:0008092 cytoskeletal protein binding IEP Enrichment
MF GO:0015035 protein-disulfide reductase activity IEP Enrichment
MF GO:0015036 disulfide oxidoreductase activity IEP Enrichment
BP GO:0016043 cellular component organization IEP Enrichment
CC GO:0018995 host cellular component IEP Enrichment
CC GO:0032993 protein-DNA complex IEP Enrichment
CC GO:0033643 host cell part IEP Enrichment
CC GO:0033646 host intracellular part IEP Enrichment
CC GO:0033647 host intracellular organelle IEP Enrichment
CC GO:0033648 host intracellular membrane-bounded organelle IEP Enrichment
MF GO:0034061 DNA polymerase activity IEP Enrichment
BP GO:0034622 cellular protein-containing complex assembly IEP Enrichment
BP GO:0034728 nucleosome organization IEP Enrichment
CC GO:0042025 host cell nucleus IEP Enrichment
CC GO:0044815 DNA packaging complex IEP Enrichment
BP GO:0065003 protein-containing complex assembly IEP Enrichment
BP GO:0065004 protein-DNA complex assembly IEP Enrichment
BP GO:0071824 protein-DNA complex subunit organization IEP Enrichment
BP GO:0071840 cellular component organization or biogenesis IEP Enrichment
InterPro domains Description Start Stop
IPR001841 Znf_RING 269 316
No external refs found!