lcl|VRMN01000001.1_cds_KAA8497595.1_6548 (KAA8497595)

Aliases : KAA8497595

Description : Transposable element Tc3 transposase

Gene families : OG_01_0003235 (OrthoFinder) Phylogenetic Tree(s): OG0003235_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: lcl\|VRMN01000001.1_cds_KAA8497595.1_6548
Cluster	HCCA: Cluster_54

Target	Alias	Description	ECC score	Gene Family Method
lcl\|VRMN01000001.1_cds_KAA8499722.1_8675	KAA8499722	Transposable element Tc3 transposase	0.06	OrthoFinder
lcl\|VRMN01000003.1_cds_KAA8496122.1_2120	KAA8496122	Transposable element Tc3 transposase	0.1	OrthoFinder
lcl\|VRMN01000004.1_cds_KAA8495201.1_3731	KAA8495201	Transposable element Tc3 transposase	0.1	OrthoFinder
lcl\|VRMN01000012.1_cds_KAA8491638.1_5106	KAA8491638	Transposable element Tc3 transposase	0.15	OrthoFinder
lcl\|VRMN01000012.1_cds_KAA8491651.1_5119	KAA8491651	Transposable element Tc3 transposase	0.12	OrthoFinder
lcl\|VRMN01000013.1_cds_KAA8491423.1_6233	KAA8491423	Transposable element Tc3 transposase	0.09	OrthoFinder
lcl\|VRMN01000017.1_cds_KAA8490931.1_6134	KAA8490931	Transposable element Tc3 transposase	0.11	OrthoFinder
lcl\|VRMN01000028.1_cds_KAA8490417.1_5040	KAA8490417	Transposable element Tc3 transposase	0.09	OrthoFinder

Type	GO Term	Name	Evidence	Source
No GO annotation available for this sequence

Type	GO Term	Name	Evidence	Source
BP	GO:0006259	DNA metabolic process	IEP	Enrichment
BP	GO:0006310	DNA recombination	IEP	Enrichment
BP	GO:0006313	transposition, DNA-mediated	IEP	Enrichment
MF	GO:0008270	zinc ion binding	IEP	Enrichment
BP	GO:0015074	DNA integration	IEP	Enrichment
BP	GO:0032196	transposition	IEP	Enrichment
BP	GO:0090304	nucleic acid metabolic process	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR038717	Tc1-like_DDE_dom	136	253

External Links

No external refs found!