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  5. lcl|VRMN01000001.1_cds_KAA8497524.1_6477

lcl|VRMN01000001.1_cds_KAA8497524.1_6477 (KAA8497524)


Aliases : KAA8497524

Description : Copia protein


Gene families : OG_01_0002924 (OrthoFinder) Phylogenetic Tree(s): OG0002924_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|VRMN01000001.1_cds_KAA8497524.1_6477
Cluster HCCA: Cluster_120

Target Alias Description ECC score Gene Family Method Actions
lcl|VRMN01000002.1_cds_KAA8496360.1_89 KAA8496360 Copia protein 0.02 OrthoFinder
lcl|VRMN01000006.1_cds_KAA8493870.1_4632 KAA8493870 Hypothetical protein 0.02 OrthoFinder
lcl|VRMN01000014.1_cds_KAA8491350.1_2351 KAA8491350 Copia protein 0.07 OrthoFinder
lcl|VRMN01000015.1_cds_KAA8491245.1_5873 KAA8491245 Hypothetical protein 0.02 OrthoFinder
lcl|VRMN01000015.1_cds_KAA8491246.1_5874 KAA8491246 Hypothetical protein 0.02 OrthoFinder
lcl|VRMN01000019.1_cds_KAA8490756.1_6012 KAA8490756 Hypothetical protein 0.1 OrthoFinder
lcl|VRMN01000019.1_cds_KAA8490757.1_6013 KAA8490757 Copia protein 0.12 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006259 DNA metabolic process IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
BP GO:0008150 biological_process IEP Enrichment
BP GO:0008152 metabolic process IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
BP GO:0015074 DNA integration IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0044238 primary metabolic process IEP Enrichment
BP GO:0044260 cellular macromolecule metabolic process IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
BP GO:0071704 organic substance metabolic process IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR013103 RVT_2 825 1064
No external refs found!