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  5. lcl|VRMN01000001.1_cds_KAA8497516.1_6469

lcl|VRMN01000001.1_cds_KAA8497516.1_6469 (KAA8497516)


Aliases : KAA8497516

Description : Hypothetical protein


Gene families : OG_01_0000420 (OrthoFinder) Phylogenetic Tree(s): OG0000420_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|VRMN01000001.1_cds_KAA8497516.1_6469
Cluster HCCA: Cluster_17

Target Alias Description ECC score Gene Family Method Actions
lcl|VRMN01000001.1_cds_KAA8497529.1_6482 KAA8497529 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.06 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8498171.1_7124 KAA8498171 Copia protein 0.06 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8498455.1_7408 KAA8498455 gag-polyprotein putative aspartyl protease;... 0.06 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8498719.1_7672 KAA8498719 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.08 OrthoFinder
lcl|VRMN01000002.1_cds_KAA8496418.1_147 KAA8496418 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.17 OrthoFinder
lcl|VRMN01000003.1_cds_KAA8496089.1_2087 KAA8496089 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.14 OrthoFinder
lcl|VRMN01000004.1_cds_KAA8494477.1_3007 KAA8494477 Copia protein 0.06 OrthoFinder
lcl|VRMN01000007.1_cds_KAA8493353.1_9654 KAA8493353 Hypothetical protein 0.16 OrthoFinder
lcl|VRMN01000007.1_cds_KAA8493354.1_9655 KAA8493354 Hypothetical protein 0.08 OrthoFinder
lcl|VRMN01000007.1_cds_KAA8493392.1_9693 KAA8493392 Hypothetical protein 0.17 OrthoFinder
lcl|VRMN01000008.1_cds_KAA8492969.1_2705 KAA8492969 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.06 OrthoFinder
lcl|VRMN01000008.1_cds_KAA8493086.1_2822 KAA8493086 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.11 OrthoFinder
lcl|VRMN01000008.1_cds_KAA8493090.1_2826 KAA8493090 Retrotransposon gag domain [Interproscan]. 0.07 OrthoFinder
lcl|VRMN01000009.1_cds_KAA8492392.1_9085 KAA8492392 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.12 OrthoFinder
lcl|VRMN01000014.1_cds_KAA8491347.1_2348 KAA8491347 Retrotransposon gag domain; Zinc finger, CCHC-type... 0.17 OrthoFinder
lcl|VRMN01000014.1_cds_KAA8491348.1_2349 KAA8491348 Hypothetical protein 0.21 OrthoFinder
lcl|VRMN01000014.1_cds_KAA8491349.1_2350 KAA8491349 Hypothetical protein 0.08 OrthoFinder
lcl|VRMN01000015.1_cds_KAA8491237.1_5865 KAA8491237 Copia protein 0.04 OrthoFinder
lcl|VRMN01000015.1_cds_KAA8491238.1_5866 KAA8491238 Integrase, catalytic core; Zinc finger, CCHC-type [Interproscan]. 0.06 OrthoFinder
lcl|VRMN01000015.1_cds_KAA8491248.1_5876 KAA8491248 Hypothetical protein 0.06 OrthoFinder
lcl|VRMN01000017.1_cds_KAA8491003.1_6206 KAA8491003 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.15 OrthoFinder
lcl|VRMN01000019.1_cds_KAA8490788.1_6044 KAA8490788 Retrotransposon gag domain [Interproscan]. 0.09 OrthoFinder
lcl|VRMN01000021.1_cds_KAA8490617.1_5716 KAA8490617 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.1 OrthoFinder
lcl|VRMN01000026.1_cds_KAA8490459.1_6405 KAA8490459 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.11 OrthoFinder
lcl|VRMN01000031.1_cds_KAA8490364.1_5754 KAA8490364 Hypothetical protein 0.06 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003677 DNA binding IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006259 DNA metabolic process IEP Enrichment
BP GO:0006310 DNA recombination IEP Enrichment
BP GO:0006313 transposition, DNA-mediated IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
BP GO:0015074 DNA integration IEP Enrichment
BP GO:0032196 transposition IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment

No InterPro domains available for this sequence

No external refs found!