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  5. lcl|VRMN01000001.1_cds_KAA8497509.1_6462

lcl|VRMN01000001.1_cds_KAA8497509.1_6462 (KAA8497509)


Aliases : KAA8497509

Description : DExH-box ATP-dependent RNA helicase DExH17


Gene families : OG_01_0000386 (OrthoFinder) Phylogenetic Tree(s): OG0000386_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|VRMN01000001.1_cds_KAA8497509.1_6462
Cluster HCCA: Cluster_101

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000865.28 tig00000865_g5079.t1 DExH-box ATP-dependent RNA helicase DExH12... 0.02 OrthoFinder
EOD12464 No alias Sec63 domain; Helicase, C-terminal; Brr2, N-terminal... 0.02 OrthoFinder
EOD14868 No alias Sec63 domain; Helicase, C-terminal; DEAD/DEAH box... 0.03 OrthoFinder
EOD17849 No alias DEAD/DEAH box helicase domain [Interproscan]. 0.01 OrthoFinder
OT_11G01240.1 No alias Brr2, N-terminal helicase PWI domain; Helicase,... 0.02 OrthoFinder
Sro610_g175200.1 No alias Putative U5 small nuclear ribonucleoprotein 200 kDa helicase 0.02 OrthoFinder
lcl|LHPG02000018.1_cds_PRW32957.1_3893 PRW32957 Activating signal cointegrator 1 complex subunit 3 isoform C 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004518 nuclease activity IEP Enrichment
MF GO:0004540 ribonuclease activity IEP Enrichment
MF GO:0005484 SNAP receptor activity IEP Enrichment
CC GO:0005886 plasma membrane IEP Enrichment
BP GO:0006810 transport IEP Enrichment
BP GO:0006890 retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum IEP Enrichment
BP GO:0006891 intra-Golgi vesicle-mediated transport IEP Enrichment
MF GO:0008234 cysteine-type peptidase activity IEP Enrichment
BP GO:0016192 vesicle-mediated transport IEP Enrichment
MF GO:0016788 hydrolase activity, acting on ester bonds IEP Enrichment
CC GO:0030117 membrane coat IEP Enrichment
CC GO:0030173 integral component of Golgi membrane IEP Enrichment
MF GO:0030674 protein-macromolecule adaptor activity IEP Enrichment
CC GO:0031228 intrinsic component of Golgi membrane IEP Enrichment
BP GO:0048193 Golgi vesicle transport IEP Enrichment
BP GO:0051179 localization IEP Enrichment
BP GO:0051234 establishment of localization IEP Enrichment
BP GO:0051641 cellular localization IEP Enrichment
MF GO:0060090 molecular adaptor activity IEP Enrichment
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 131 233
IPR004179 Sec63-dom 595 870
IPR011545 DEAD/DEAH_box_helicase_dom 55 94
IPR001650 Helicase_C 382 461
No external refs found!