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  5. lcl|VRMN01000001.1_cds_KAA8497486.1_6439

lcl|VRMN01000001.1_cds_KAA8497486.1_6439 (KAA8497486)


Aliases : KAA8497486

Description : DNA polymerase delta catalytic subunit


Gene families : OG_01_0001531 (OrthoFinder) Phylogenetic Tree(s): OG0001531_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|VRMN01000001.1_cds_KAA8497486.1_6439
Cluster HCCA: Cluster_70

Target Alias Description ECC score Gene Family Method Actions
EOD17546 No alias Putative DNA polymerase POLD1 [Ensembl]. 0.02 OrthoFinder
EOD33882 No alias Putative DNA polymerase POLD1 [Ensembl]. 0.02 OrthoFinder
PTI_12G00450.1 No alias DNA-directed DNA polymerase, family B, multifunctional... 0.02 OrthoFinder
XM_002502424.1 MICPUN_97378, 97378 DNA-directed DNA polymerase, family B, exonuclease... 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEA Interproscan
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000123 histone acetyltransferase complex IEP Enrichment
BP GO:0000375 RNA splicing, via transesterification reactions IEP Enrichment
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Enrichment
BP GO:0000398 mRNA splicing, via spliceosome IEP Enrichment
CC GO:0000502 proteasome complex IEP Enrichment
MF GO:0003887 DNA-directed DNA polymerase activity IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
CC GO:0005681 spliceosomal complex IEP Enrichment
BP GO:0006260 DNA replication IEP Enrichment
MF GO:0008170 N-methyltransferase activity IEP Enrichment
MF GO:0008276 protein methyltransferase activity IEP Enrichment
BP GO:0008380 RNA splicing IEP Enrichment
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP Enrichment
BP GO:0009894 regulation of catabolic process IEP Enrichment
MF GO:0016278 lysine N-methyltransferase activity IEP Enrichment
MF GO:0016279 protein-lysine N-methyltransferase activity IEP Enrichment
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP Enrichment
MF GO:0018024 histone-lysine N-methyltransferase activity IEP Enrichment
MF GO:0019781 NEDD8 activating enzyme activity IEP Enrichment
CC GO:0031248 protein acetyltransferase complex IEP Enrichment
BP GO:0032446 protein modification by small protein conjugation IEP Enrichment
MF GO:0034061 DNA polymerase activity IEP Enrichment
MF GO:0042054 histone methyltransferase activity IEP Enrichment
BP GO:0042176 regulation of protein catabolic process IEP Enrichment
BP GO:0045116 protein neddylation IEP Enrichment
CC GO:0070461 SAGA-type complex IEP Enrichment
MF GO:0140097 catalytic activity, acting on DNA IEP Enrichment
CC GO:0140513 nuclear protein-containing complex IEP Enrichment
CC GO:0140535 intracellular protein-containing complex IEP Enrichment
CC GO:1902493 acetyltransferase complex IEP Enrichment
CC GO:1902494 catalytic complex IEP Enrichment
CC GO:1905368 peptidase complex IEP Enrichment
CC GO:1905369 endopeptidase complex IEP Enrichment
InterPro domains Description Start Stop
IPR025687 Znf-C4pol 1042 1123
IPR006134 DNA-dir_DNA_pol_B_multi_dom 578 1004
IPR006133 DNA-dir_DNA_pol_B_exonuc 168 510
No external refs found!