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  5. lcl|VRMN01000001.1_cds_KAA8497478.1_6431

lcl|VRMN01000001.1_cds_KAA8497478.1_6431 (KAA8497478)


Aliases : KAA8497478

Description : Tc3 transposase, DNA binding domain [Interproscan].


Gene families : OG_01_0000753 (OrthoFinder) Phylogenetic Tree(s): OG0000753_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|VRMN01000001.1_cds_KAA8497478.1_6431

Target Alias Description ECC score Gene Family Method Actions
lcl|VRMN01000001.1_cds_KAA8497536.1_6489 KAA8497536 Transposable element Tc3 transposase 0.15 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8497567.1_6520 KAA8497567 Transposable element Tc3 transposase 0.09 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8497597.1_6550 KAA8497597 Transposable element Tc3 transposase 0.08 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8498132.1_7085 KAA8498132 Transposable element Tc3 transposase 0.08 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8498741.1_7694 KAA8498741 Transposable element Tc3 transposase 0.18 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8499803.1_8756 KAA8499803 Transposable element Tc3 transposase 0.04 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8499908.1_8861 KAA8499908 Transposable element Tc3 transposase 0.06 OrthoFinder
lcl|VRMN01000002.1_cds_KAA8496284.1_13 KAA8496284 Transposable element Tc3 transposase 0.06 OrthoFinder
lcl|VRMN01000002.1_cds_KAA8496322.1_51 KAA8496322 Transposable element Tc3 transposase 0.13 OrthoFinder
lcl|VRMN01000003.1_cds_KAA8495849.1_1847 KAA8495849 Transposable element Tc3 transposase 0.08 OrthoFinder
lcl|VRMN01000004.1_cds_KAA8495184.1_3714 KAA8495184 Transposable element Tc3 transposase 0.06 OrthoFinder
lcl|VRMN01000006.1_cds_KAA8493477.1_4239 KAA8493477 Transposable element Tc3 transposase 0.02 OrthoFinder
lcl|VRMN01000006.1_cds_KAA8493666.1_4428 KAA8493666 Transposable element Tc3 transposase 0.02 OrthoFinder
lcl|VRMN01000006.1_cds_KAA8493874.1_4636 KAA8493874 Transposable element Tc3 transposase 0.07 OrthoFinder
lcl|VRMN01000006.1_cds_KAA8493884.1_4646 KAA8493884 Transposable element Tc3 transposase 0.06 OrthoFinder
lcl|VRMN01000008.1_cds_KAA8492868.1_2604 KAA8492868 Transposable element Tc3 transposase 0.07 OrthoFinder
lcl|VRMN01000008.1_cds_KAA8493094.1_2830 KAA8493094 Transposable element Tc3 transposase 0.02 OrthoFinder
lcl|VRMN01000010.1_cds_KAA8492124.1_5307 KAA8492124 Transposable element Tc3 transposase 0.04 OrthoFinder
lcl|VRMN01000012.1_cds_KAA8491613.1_5081 KAA8491613 Transposable element Tc3 transposase 0.08 OrthoFinder
lcl|VRMN01000014.1_cds_KAA8491365.1_2366 KAA8491365 Hypothetical protein 0.02 OrthoFinder
lcl|VRMN01000015.1_cds_KAA8491181.1_5809 KAA8491181 Transposable element Tc3 transposase 0.18 OrthoFinder
lcl|VRMN01000015.1_cds_KAA8491239.1_5867 KAA8491239 Tc3 transposase, DNA binding domain [Interproscan]. 0.15 OrthoFinder
lcl|VRMN01000015.1_cds_KAA8491240.1_5868 KAA8491240 Transposable element Tc3 transposase 0.09 OrthoFinder
lcl|VRMN01000019.1_cds_KAA8490780.1_6036 KAA8490780 Hypothetical protein 0.06 OrthoFinder
lcl|VRMN01000023.1_cds_KAA8490539.1_5905 KAA8490539 Transposable element Tc3 transposase 0.02 OrthoFinder
lcl|VRMN01000036.1_cds_KAA8490274.1_5944 KAA8490274 Transposable element Tc3 transposase 0.04 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006259 DNA metabolic process IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
MF GO:0008270 zinc ion binding IEP Enrichment
BP GO:0015074 DNA integration IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043169 cation binding IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0044238 primary metabolic process IEP Enrichment
BP GO:0044260 cellular macromolecule metabolic process IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
MF GO:0046872 metal ion binding IEP Enrichment
MF GO:0046914 transition metal ion binding IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR025898 Tc3_transposase_DNA-bd_dom 7 49
No external refs found!