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  5. PTI_31G00810.1

PTI_31G00810.1


Description : RNA polymerase sigma-70 region 4; RNA polymerase sigma-70 region 2; RNA polymerase sigma-70 region 3 [Interproscan].


Gene families : OG_01_0000286 (OrthoFinder) Phylogenetic Tree(s): OG0000286_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: PTI_31G00810.1
Cluster HCCA: Cluster_24

Target Alias Description ECC score Gene Family Method Actions
Cre03.g193400 30787655 RNA biosynthesis.organelle... 0.01 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEA Interproscan
BP GO:0006352 DNA-templated transcription, initiation IEA Interproscan
BP GO:0006355 regulation of transcription, DNA-templated IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004518 nuclease activity IEP Enrichment
MF GO:0004527 exonuclease activity IEP Enrichment
MF GO:0005506 iron ion binding IEP Enrichment
MF GO:0008408 3'-5' exonuclease activity IEP Enrichment
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP Enrichment
MF GO:0020037 heme binding IEP Enrichment
MF GO:0046906 tetrapyrrole binding IEP Enrichment
InterPro domains Description Start Stop
IPR007630 RNA_pol_sigma70_r4 384 434
IPR007627 RNA_pol_sigma70_r2 202 270
IPR007624 RNA_pol_sigma70_r3 281 334
No external refs found!