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Description : Ribosomal protein S10 domain [Interproscan].
Gene families : OG_01_0003147 (OrthoFinder) Phylogenetic Tree(s): OG0003147_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: PTI_31G00020.1 | |
| Cluster | HCCA: Cluster_4 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Cpa|evm.model.tig00000842.28 | tig00000842_g4847.t1 | Protein biosynthesis.cytosolic ribosome.small subunit... | 0.12 | OrthoFinder | |
| Cre16.g660150 | 30777532 | Protein biosynthesis.cytosolic ribosome.small subunit... | 0.16 | OrthoFinder | |
| Cz02g17070.t1 | No alias | Ribosomal protein S10 domain [Interproscan]. | 0.12 | OrthoFinder | |
| Dusal.0043s00003.1 | 33199620 | Ribosomal protein S10 domain [Interproscan]. | 0.09 | OrthoFinder | |
| EOD09635 | No alias | Ribosomal protein S10 domain [Interproscan]. | 0.1 | OrthoFinder | |
| OT_03G01040.1 | No alias | Ribosomal protein S10 domain [Interproscan]. | 0.08 | OrthoFinder | |
| Sro143_g066550.1 | Contig3754.g28761 | 40S ribosomal protein S20 | 0.14 | OrthoFinder | |
| SymbC1.scaffold2016.8 | 2016.8 | Ribosomal protein S10 domain [Interproscan]. | 0.03 | OrthoFinder | |
| SymbC1.scaffold3818.4 | 3818.4 | Ribosomal protein S10 domain [Interproscan]. | 0.03 | OrthoFinder | |
| TP04G01100.1 | No alias | Ribosomal protein S10 domain [Interproscan]. | 0.04 | OrthoFinder | |
| Vocar.0004s0092.1 | 32889737 | Ribosomal protein S10 domain [Interproscan]. | 0.06 | OrthoFinder | |
| XM_002501663.1 | MICPUN_57744, 57744 | Ribosomal protein S10 domain [Interproscan]. | 0.1 | OrthoFinder | |
| XM_003062597.1 | MicpuC2_35904, 35904 | Ribosomal protein S10 domain [Interproscan]. | 0.09 | OrthoFinder | |
| lcl|LHPG02000010.1_cds_PRW51058.1_1171 | PRW51058 | Ribosomal S1 | 0.07 | OrthoFinder | |
| lcl|VRMN01000001.1_cds_KAA8499872.1_8825 | KAA8499872 | 40S ribosomal protein S20 | 0.12 | OrthoFinder |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003674 | molecular_function | IEP | Enrichment |
| MF | GO:0003676 | nucleic acid binding | IEP | Enrichment |
| MF | GO:0003690 | double-stranded DNA binding | IEP | Enrichment |
| MF | GO:0003723 | RNA binding | IEP | Enrichment |
| MF | GO:0003735 | structural constituent of ribosome | IEP | Enrichment |
| MF | GO:0003899 | DNA-directed 5'-3' RNA polymerase activity | IEP | Enrichment |
| MF | GO:0005198 | structural molecule activity | IEP | Enrichment |
| CC | GO:0005575 | cellular_component | IEP | Enrichment |
| CC | GO:0005840 | ribosome | IEP | Enrichment |
| BP | GO:0006298 | mismatch repair | IEP | Enrichment |
| BP | GO:0006412 | translation | IEP | Enrichment |
| BP | GO:0006518 | peptide metabolic process | IEP | Enrichment |
| BP | GO:0006807 | nitrogen compound metabolic process | IEP | Enrichment |
| BP | GO:0008150 | biological_process | IEP | Enrichment |
| BP | GO:0008152 | metabolic process | IEP | Enrichment |
| BP | GO:0009058 | biosynthetic process | IEP | Enrichment |
| BP | GO:0009059 | macromolecule biosynthetic process | IEP | Enrichment |
| BP | GO:0009987 | cellular process | IEP | Enrichment |
| BP | GO:0019538 | protein metabolic process | IEP | Enrichment |
| MF | GO:0019843 | rRNA binding | IEP | Enrichment |
| BP | GO:0022613 | ribonucleoprotein complex biogenesis | IEP | Enrichment |
| MF | GO:0030983 | mismatched DNA binding | IEP | Enrichment |
| MF | GO:0034062 | 5'-3' RNA polymerase activity | IEP | Enrichment |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | Enrichment |
| BP | GO:0034645 | cellular macromolecule biosynthetic process | IEP | Enrichment |
| BP | GO:0042254 | ribosome biogenesis | IEP | Enrichment |
| BP | GO:0043043 | peptide biosynthetic process | IEP | Enrichment |
| BP | GO:0043170 | macromolecule metabolic process | IEP | Enrichment |
| CC | GO:0043226 | organelle | IEP | Enrichment |
| CC | GO:0043228 | non-membrane-bounded organelle | IEP | Enrichment |
| CC | GO:0043229 | intracellular organelle | IEP | Enrichment |
| CC | GO:0043232 | intracellular non-membrane-bounded organelle | IEP | Enrichment |
| BP | GO:0043603 | cellular amide metabolic process | IEP | Enrichment |
| BP | GO:0043604 | amide biosynthetic process | IEP | Enrichment |
| BP | GO:0044085 | cellular component biogenesis | IEP | Enrichment |
| BP | GO:0044237 | cellular metabolic process | IEP | Enrichment |
| BP | GO:0044238 | primary metabolic process | IEP | Enrichment |
| BP | GO:0044249 | cellular biosynthetic process | IEP | Enrichment |
| BP | GO:0044260 | cellular macromolecule metabolic process | IEP | Enrichment |
| BP | GO:0044267 | cellular protein metabolic process | IEP | Enrichment |
| BP | GO:0044271 | cellular nitrogen compound biosynthetic process | IEP | Enrichment |
| BP | GO:0071704 | organic substance metabolic process | IEP | Enrichment |
| MF | GO:0097747 | RNA polymerase activity | IEP | Enrichment |
| CC | GO:0110165 | cellular anatomical entity | IEP | Enrichment |
| BP | GO:1901564 | organonitrogen compound metabolic process | IEP | Enrichment |
| BP | GO:1901566 | organonitrogen compound biosynthetic process | IEP | Enrichment |
| BP | GO:1901576 | organic substance biosynthetic process | IEP | Enrichment |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR027486 | Ribosomal_S10_dom | 23 | 117 |
| No external refs found! |