PTI_30G01200.1


Description : Regulator of chromosome condensation (RCC1) repeat; Regulator of chromosome condensation, RCC1 [Interproscan].


Gene families : OG_01_0000020 (OrthoFinder) Phylogenetic Tree(s): OG0000020_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: PTI_30G01200.1
Cluster HCCA: Cluster_22

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00020801.76 tig00020801_g13957.t1 No description available 0.02 OrthoFinder
Cpa|evm.model.tig00021428.3 tig00021428_g21144.t1 No description available 0.02 OrthoFinder
OT_10G01050.1 No alias Brevis radix (BRX) domain; Regulator of chromosome... 0.02 OrthoFinder
Sro443_g143990.1 Contig715.g8245 Ultraviolet-B receptor UVR8 0.03 OrthoFinder
SymbC1.scaffold33.10 33.10 Regulator of chromosome condensation (RCC1) repeat;... 0.02 OrthoFinder
TP03G07260.1 No alias Regulator of chromosome condensation, RCC1 [Interproscan]. 0.02 OrthoFinder
Transcript_contig_10133 10133 Regulator of chromosome condensation, RCC1 [Interproscan]. 0.02 OrthoFinder
XM_002503517.1 MICPUN_108592, 108592 Regulator of chromosome condensation, RCC1 [Interproscan]. 0.02 OrthoFinder
lcl|BLLF01000950.1_cds_GFH16129.1_10606 HaLaN_12494, GFH16129 Regulator of chromosome condensation, RCC1 [Interproscan]. 0.02 OrthoFinder
lcl|LHPG02000025.1_cds_PRW20195.1_5746 PRW20195 RCC2-like protein 0.02 OrthoFinder
lcl|VRMN01000010.1_cds_KAA8492278.1_5461 KAA8492278 Ultraviolet-B receptor UVR8 0.02 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP Enrichment
MF GO:0003909 DNA ligase activity IEP Enrichment
MF GO:0003911 DNA ligase (NAD+) activity IEP Enrichment
MF GO:0004146 dihydrofolate reductase activity IEP Enrichment
CC GO:0005886 plasma membrane IEP Enrichment
BP GO:0006575 cellular modified amino acid metabolic process IEP Enrichment
BP GO:0006629 lipid metabolic process IEP Enrichment
BP GO:0006720 isoprenoid metabolic process IEP Enrichment
BP GO:0006760 folic acid-containing compound metabolic process IEP Enrichment
BP GO:0008299 isoprenoid biosynthetic process IEP Enrichment
BP GO:0009396 folic acid-containing compound biosynthetic process IEP Enrichment
CC GO:0009521 photosystem IEP Enrichment
CC GO:0009523 photosystem II IEP Enrichment
CC GO:0009654 photosystem II oxygen evolving complex IEP Enrichment
BP GO:0015979 photosynthesis IEP Enrichment
MF GO:0016491 oxidoreductase activity IEP Enrichment
MF GO:0016645 oxidoreductase activity, acting on the CH-NH group of donors IEP Enrichment
MF GO:0016646 oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor IEP Enrichment
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP Enrichment
MF GO:0016874 ligase activity IEP Enrichment
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP Enrichment
CC GO:0019898 extrinsic component of membrane IEP Enrichment
MF GO:0033743 peptide-methionine (R)-S-oxide reductase activity IEP Enrichment
BP GO:0042398 cellular modified amino acid biosynthetic process IEP Enrichment
BP GO:0042558 pteridine-containing compound metabolic process IEP Enrichment
BP GO:0042559 pteridine-containing compound biosynthetic process IEP Enrichment
BP GO:0046653 tetrahydrofolate metabolic process IEP Enrichment
BP GO:0046654 tetrahydrofolate biosynthetic process IEP Enrichment
BP GO:0055114 obsolete oxidation-reduction process IEP Enrichment
CC GO:1990204 oxidoreductase complex IEP Enrichment
InterPro domains Description Start Stop
IPR000408 Reg_chr_condens 478 528
IPR000408 Reg_chr_condens 285 329
IPR000408 Reg_chr_condens 586 630
No external refs found!