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  5. PTI_30G00520.1

PTI_30G00520.1


Description : Zinc finger, C3HC4 type (RING finger) [Interproscan].


Gene families : OG_01_0002547 (OrthoFinder) Phylogenetic Tree(s): OG0002547_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: PTI_30G00520.1
Cluster HCCA: Cluster_122

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000169.18 tig00000169_g11887.t1 Protein degradation.peptide tagging.Ubiquitin... 0.03 OrthoFinder
Cre14.g625802 30776694 Protein degradation.peptide tagging.Ubiquitin... 0.03 OrthoFinder
OT_03G05020.1 No alias Hypothetical protein 0.02 OrthoFinder
Sro79_g042820.1 Contig1826.g16089 RING 0.02 OrthoFinder
lcl|LHPG02000001.1_cds_PRW61074.1_145 PRW61074 E3 ubiquitin-ligase BRE1-like 2 0.04 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0004386 helicase activity IEP Enrichment
MF GO:0004652 polynucleotide adenylyltransferase activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0042393 histone binding IEP Enrichment
BP GO:0043631 RNA polyadenylation IEP Enrichment
MF GO:0070566 adenylyltransferase activity IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment

No InterPro domains available for this sequence

No external refs found!