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  5. PTI_29G00720.1

PTI_29G00720.1


Description : Paired amphipathic helix; Histone deacetylase interacting domain; Sin3, C-terminal [Interproscan].


Gene families : OG_01_0001776 (OrthoFinder) Phylogenetic Tree(s): OG0001776_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: PTI_29G00720.1
Cluster HCCA: Cluster_120

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00021234.23 tig00021234_g19397.t1 Paired amphipathic helix protein Sin3-like 3... 0.01 OrthoFinder
OT_01G04000.1 No alias Sin3, C-terminal; Paired amphipathic helix; Histone... 0.02 OrthoFinder
Sro902_g218120.1 Contig309.g4063 Amphipathic helix protein Sin3-like 0.04 OrthoFinder
Vocar.0015s0303.1 32899190 Paired amphipathic helix; Sin3, C-terminal; Histone... 0.03 OrthoFinder
lcl|BLLF01001226.1_cds_GFH17943.1_12420 HaLaN_14668, GFH17943 HDAC_interact domain-containing protein 0.03 OrthoFinder

Type GO Term Name Evidence Source
BP GO:0006355 regulation of transcription, DNA-templated IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Enrichment
BP GO:0000375 RNA splicing, via transesterification reactions IEP Enrichment
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Enrichment
BP GO:0000398 mRNA splicing, via spliceosome IEP Enrichment
MF GO:0003674 molecular_function IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0004652 polynucleotide adenylyltransferase activity IEP Enrichment
MF GO:0004817 cysteine-tRNA ligase activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
CC GO:0005643 nuclear pore IEP Enrichment
BP GO:0006423 cysteinyl-tRNA aminoacylation IEP Enrichment
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IEP Enrichment
BP GO:0006913 nucleocytoplasmic transport IEP Enrichment
MF GO:0008519 ammonium transmembrane transporter activity IEP Enrichment
BP GO:0015696 ammonium transport IEP Enrichment
MF GO:0017056 structural constituent of nuclear pore IEP Enrichment
CC GO:0030120 vesicle coat IEP Enrichment
CC GO:0030127 COPII vesicle coat IEP Enrichment
CC GO:0032991 protein-containing complex IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
BP GO:0043631 RNA polyadenylation IEP Enrichment
BP GO:0046907 intracellular transport IEP Enrichment
BP GO:0051169 nuclear transport IEP Enrichment
BP GO:0051641 cellular localization IEP Enrichment
BP GO:0051649 establishment of localization in cell IEP Enrichment
MF GO:0070403 NAD+ binding IEP Enrichment
MF GO:0070566 adenylyltransferase activity IEP Enrichment
CC GO:0071203 WASH complex IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
InterPro domains Description Start Stop
IPR003822 PAH 596 639
IPR003822 PAH 445 489
IPR013194 HDAC_interact_dom 835 930
IPR031693 Sin3_C 1308 1464
No external refs found!