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  5. PTI_28G00370.1

PTI_28G00370.1


Description : tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6 [Interproscan].


Gene families : OG_01_0004180 (OrthoFinder) Phylogenetic Tree(s): OG0004180_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: PTI_28G00370.1
Cluster HCCA: Cluster_68

Target Alias Description ECC score Gene Family Method Actions
Cre12.g543100 30792753 RNA processing.RNA modification.rRNA/tRNA... 0.05 OrthoFinder
EOD37366 No alias tRNA (adenine(58)-N(1))-methyltransferase non-catalytic... 0.02 OrthoFinder
OT_05G03670.1 No alias tRNA (adenine(58)-N(1))-methyltransferase non-catalytic... 0.11 OrthoFinder
Transcript_contig_90923 90923 Hypothetical protein 0.01 OrthoFinder
Vocar.0007s0085.1 32887902 tRNA (adenine(58)-N(1))-methyltransferase non-catalytic... 0.06 OrthoFinder
XM_002506620.1 MICPUN_104523, 104523 tRNA (adenine(58)-N(1))-methyltransferase non-catalytic... 0.08 OrthoFinder
XM_003061271.1 MicpuC2_60934, 60934 tRNA (adenine(58)-N(1))-methyltransferase non-catalytic... 0.02 OrthoFinder

Type GO Term Name Evidence Source
BP GO:0030488 tRNA methylation IEA Interproscan
CC GO:0031515 tRNA (m1A) methyltransferase complex IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000105 histidine biosynthetic process IEP Enrichment
MF GO:0000166 nucleotide binding IEP Enrichment
BP GO:0002097 tRNA wobble base modification IEP Enrichment
BP GO:0002098 tRNA wobble uridine modification IEP Enrichment
MF GO:0003674 molecular_function IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003724 RNA helicase activity IEP Enrichment
MF GO:0003879 ATP phosphoribosyltransferase activity IEP Enrichment
MF GO:0004425 indole-3-glycerol-phosphate synthase activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
CC GO:0005730 nucleolus IEP Enrichment
BP GO:0006351 transcription, DNA-templated IEP Enrichment
BP GO:0006360 transcription by RNA polymerase I IEP Enrichment
BP GO:0006547 histidine metabolic process IEP Enrichment
BP GO:0006576 cellular biogenic amine metabolic process IEP Enrichment
MF GO:0008134 transcription factor binding IEP Enrichment
MF GO:0008168 methyltransferase activity IEP Enrichment
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Enrichment
MF GO:0016763 pentosyltransferase activity IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
CC GO:0030684 preribosome IEP Enrichment
CC GO:0032040 small-subunit processome IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
BP GO:0032774 RNA biosynthetic process IEP Enrichment
CC GO:0033588 elongator holoenzyme complex IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
BP GO:0042254 ribosome biogenesis IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
BP GO:0044085 cellular component biogenesis IEP Enrichment
BP GO:0044106 cellular amine metabolic process IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
BP GO:0097659 nucleic acid-templated transcription IEP Enrichment
MF GO:0140098 catalytic activity, acting on RNA IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
CC GO:1990904 ribonucleoprotein complex IEP Enrichment
InterPro domains Description Start Stop
IPR017423 TRM6 65 299
No external refs found!