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  5. PTI_28G00240.1

PTI_28G00240.1


Description : Helicase, C-terminal; Helicase-associated domain; Domain of unknown function DUF1605; DEAD/DEAH box helicase domain [Interproscan].


Gene families : OG_01_0000042 (OrthoFinder) Phylogenetic Tree(s): OG0000042_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood HRR: PTI_28G00240.1

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000113.111 tig00000113_g5693.t1 ATP-dependent RNA helicase DEAH13 OS=Arabidopsis thaliana 0.01 OrthoFinder
Cpa|evm.model.tig00000796.23 tig00000796_g4246.t1 Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.01 OrthoFinder
Cpa|evm.model.tig00022075.25 tig00022075_g23589.t1 RNA processing.RNA splicing.spliceosome... 0.01 OrthoFinder
Cz12g28100.t1 No alias Helicase, C-terminal; Domain of unknown function... 0.02 OrthoFinder
OT_05G03840.1 No alias Helicase-associated domain; Helicase, C-terminal; Domain... 0.03 OrthoFinder
Sro35_g022410.1 Contig3323.g26118 Splicing factor ATP-dependent RNA helicase 0.03 OrthoFinder
Sro4_g003320.1 Contig3815.g29250 Splicing factor ATP-dependent RNA helicase 0.04 OrthoFinder
Sro834_g208730.1 Contig2061.g17675 Splicing factor ATP-dependent RNA helicase 0.05 OrthoFinder
Transcript_contig_55707 55707 Helicase, C-terminal; S1 domain; DEAD/DEAH box helicase... 0.01 OrthoFinder
Vocar.0005s0040.1 32884011 Helicase-associated domain; Domain of unknown function... 0.02 OrthoFinder
XM_002502185.1 MICPUN_81845, 81845 Helicase, C-terminal; Helicase-associated domain; Domain... 0.03 OrthoFinder
XM_003059475.1 MicpuC2_18184, 18184 AAA+ ATPase domain; Helicase, C-terminal;... 0.02 OrthoFinder
lcl|BLLF01000465.1_cds_GFH12063.1_6540 HaLaN_07690, GFH12063 Hypothetical protein 0.02 OrthoFinder
lcl|LHPG02000002.1_cds_PRW60688.1_4603 PRW60688 Putative pre-mRNA-splicing factor ATP-dependent RNA helicase 0.03 OrthoFinder
lcl|LHPG02000018.1_cds_PRW32898.1_3654 PRW32898 ATP-dependent RNA helicase isoform X1 0.03 OrthoFinder
lcl|VRMN01000002.1_cds_KAA8497022.1_751 KAA8497022 ATP-dependent RNA helicase dhx8 0.01 OrthoFinder
lcl|VRMN01000010.1_cds_KAA8492270.1_5453 KAA8492270 Putative pre-mRNA-splicing factor ATP-dependent RNA... 0.04 OrthoFinder
lcl|VRMN01000026.1_cds_KAA8490469.1_6415 KAA8490469 Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0004386 helicase activity IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP Enrichment
MF GO:0003887 DNA-directed DNA polymerase activity IEP Enrichment
MF GO:0004527 exonuclease activity IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
BP GO:0006260 DNA replication IEP Enrichment
MF GO:0008408 3'-5' exonuclease activity IEP Enrichment
MF GO:0034061 DNA polymerase activity IEP Enrichment
InterPro domains Description Start Stop
IPR007502 Helicase-assoc_dom 461 549
IPR011709 DUF1605 615 691
IPR001650 Helicase_C 266 398
IPR011545 DEAD/DEAH_box_helicase_dom 64 221
No external refs found!