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  5. PTI_27G01230.1

PTI_27G01230.1


Description : ATPase, AAA-type, core; AAA ATPase, AAA+ lid domain [Interproscan].


Gene families : OG_01_0000083 (OrthoFinder) Phylogenetic Tree(s): OG0000083_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: PTI_27G01230.1
Cluster HCCA: Cluster_122

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000525.10 tig00000525_g1953.t1 Cell division control protein 48 homolog C... 0.02 OrthoFinder
Cpa|evm.model.tig00021428.19 tig00021428_g21162.t1 Peroxisome biogenesis protein 1 OS=Arabidopsis thaliana 0.01 OrthoFinder
Cre06.g269950 30778959, CDC48 Cell division control protein 48 homolog E... 0.02 OrthoFinder
Cre09.g398550 30781371 Cell division control protein 48 homolog C... 0.01 OrthoFinder
Cre17.g700300 30781628, CGL22 Cell division control protein 48 homolog B... 0.02 OrthoFinder
Cz09g30150.t1 No alias ATPase, AAA-type, core; AAA ATPase, AAA+ lid domain;... 0.02 OrthoFinder
Sro1493_g277320.1 Contig1998.g17101 Metalloprotease FTSH 0.03 OrthoFinder
Sro157_g071160.1 Contig2362.g19406 Spermatogenesis-associated protein 5-like protein 1 0.01 OrthoFinder
Sro287_g108550.1 Contig252.g3096 Transitional endoplasmic reticulum ATPase 0.02 OrthoFinder
Sro387_g132160.1 Contig424.g5701 Spermatogenesis-associated protein 5-like protein 1 0.02 OrthoFinder
TP01G08270.1 No alias ATPase, AAA-type, core [Interproscan]. 0.02 OrthoFinder
Vocar.0026s0006.1 32892589 ATPase, AAA-type, core [Interproscan]. 0.01 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000145 exocyst IEP Enrichment
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP Enrichment
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP Enrichment
CC GO:0005643 nuclear pore IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006401 RNA catabolic process IEP Enrichment
BP GO:0006402 mRNA catabolic process IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
BP GO:0006904 vesicle docking involved in exocytosis IEP Enrichment
BP GO:0008033 tRNA processing IEP Enrichment
MF GO:0008175 tRNA methyltransferase activity IEP Enrichment
MF GO:0008176 tRNA (guanine-N7-)-methyltransferase activity IEP Enrichment
BP GO:0009057 macromolecule catabolic process IEP Enrichment
BP GO:0009451 RNA modification IEP Enrichment
BP GO:0009892 negative regulation of metabolic process IEP Enrichment
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Enrichment
BP GO:0010629 negative regulation of gene expression IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
MF GO:0016423 tRNA (guanine) methyltransferase activity IEP Enrichment
MF GO:0016779 nucleotidyltransferase activity IEP Enrichment
BP GO:0019439 aromatic compound catabolic process IEP Enrichment
MF GO:0019899 enzyme binding IEP Enrichment
BP GO:0022406 membrane docking IEP Enrichment
MF GO:0031625 ubiquitin protein ligase binding IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
BP GO:0034655 nucleobase-containing compound catabolic process IEP Enrichment
MF GO:0042393 histone binding IEP Enrichment
BP GO:0044248 cellular catabolic process IEP Enrichment
BP GO:0044265 cellular macromolecule catabolic process IEP Enrichment
MF GO:0044389 ubiquitin-like protein ligase binding IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
BP GO:0046700 heterocycle catabolic process IEP Enrichment
BP GO:0048278 vesicle docking IEP Enrichment
BP GO:0051640 organelle localization IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
CC GO:0099023 vesicle tethering complex IEP Enrichment
BP GO:0140029 exocytic process IEP Enrichment
BP GO:0140056 organelle localization by membrane tethering IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR041569 AAA_lid_3 842 894
IPR003959 ATPase_AAA_core 400 541
IPR003959 ATPase_AAA_core 685 819
No external refs found!