PTI_27G00580.1

Description : Up-frameshift suppressor 2, C-terminal; MIF4G-like, type 3 [Interproscan].

Gene families : OG_01_0002867 (OrthoFinder) Phylogenetic Tree(s): OG0002867_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: PTI_27G00580.1
Cluster	HCCA: Cluster_124

Target	Alias	Description	ECC score	Gene Family Method
Cpa\|evm.model.tig00022080.18	tig00022080_g23802.t1	Regulator of nonsense transcripts UPF2 OS=Arabidopsis thaliana	0.03	OrthoFinder
Cre17.g729250	30782291, UPF2	RNA processing.RNA quality control Exon Junction complex...	0.02	OrthoFinder
XM_002501851.1	MICPUN_58110, 58110	MIF4G-like, type 3; Up-frameshift suppressor 2,...	0.02	OrthoFinder
lcl\|LHPG02000007.1_cds_PRW57003.1_9102	PRW57003	Regulator of nonsense transcripts UPF2	0.04	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	Interproscan
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR007193	Upf2/Nmd2_C	1248	1379
IPR003890	MIF4G-like_typ-3	639	814

External Links

No external refs found!